r"""

===================================================================
flux - Reactive flux an transition pathways (:mod:`emma2.msm.flux`)
===================================================================

.. currentmodule:: emma2.msm.flux

This module contains functions to compute reactive flux networks and
find dominant reaction pathways in such networks.

TPT-object
==========

.. autosummary::
   :toctree: generated/

   tpt - ReactiveFlux object

Reactive flux
=============

.. autosummary::
   :toctree: generated/

   flux_matrix - TPT flux network
   to_netflux - Netflux from gross flux
   flux_production - Net flux-production for all states
   flux_producers
   flux_consumers
   coarsegrain

Reaction rates and fluxes
=========================

.. autosummary::
   :toctree: generated/

   total_flux
   rate
   mfpt
   

Pathway decomposition
=====================

.. autosummary::
   :toctree: generated/

   pathways

"""

from .api import *

from .api import *

--- 
+++ 
@@ -1 +1,54 @@
+r"""
+
+===================================================================
+flux - Reactive flux an transition pathways (:mod:`emma2.msm.flux`)
+===================================================================
+
+.. currentmodule:: emma2.msm.flux
+
+This module contains functions to compute reactive flux networks and
+find dominant reaction pathways in such networks.
+
+TPT-object
+==========
+
+.. autosummary::
+   :toctree: generated/
+
+   tpt - ReactiveFlux object
+
+Reactive flux
+=============
+
+.. autosummary::
+   :toctree: generated/
+
+   flux_matrix - TPT flux network
+   to_netflux - Netflux from gross flux
+   flux_production - Net flux-production for all states
+   flux_producers
+   flux_consumers
+   coarsegrain
+
+Reaction rates and fluxes
+=========================
+
+.. autosummary::
+   :toctree: generated/
+
+   total_flux
+   rate
+   mfpt
+   
+
+Pathway decomposition
+=====================
+
+.. autosummary::
+   :toctree: generated/
+
+   pathways
+
+"""
+
 from .api import *
[msm/flux] Include flux package in doc
