#!/bin/zsh

# set up the conda paths
CURRDIR=$(pwd)
CONDA_ENV_PATH="${CURRDIR}"/../parserdev

# remove the conda environment if it already exists
[[ -d "${CONDA_ENV_PATH}" ]] && /opt/python/conda_default/bin/conda env remove -p "${CONDA_ENV_PATH}"

# create the conda environment using the environment.yaml file
/opt/python/conda_default/bin/conda env create -f environment.yaml -p "${CONDA_ENV_PATH}" -v

# install nose and coverage in the environment
/opt/python/conda_default/bin/conda install -p "${CONDA_ENV_PATH}" nose coverage

# install the rstfinder package in development mode
"${CONDA_ENV_PATH}"/bin/pip install -e .

# link in the training JSON file that we need for the tests
ln -s /home/nlp-text/dynamic/mheilman/discourse-parsing/rst_discourse_tb_edus_TRAINING_TRAIN.json .

# run the tests and generate the coverage report
"${CONDA_ENV_PATH}"/bin/nosetests --nologcapture tests --with-coverage --cover-package rstfinder --cover-html --with-xunit

#!/bin/zsh

# set up the conda paths
CURRDIR=$(pwd)
CONDA_ENV_PATH="${CURRDIR}"/../parserdev

# remove the conda environment if it already exists
[[ -d "${CONDA_ENV_PATH}" ]] && /opt/python/conda_default/bin/conda env remove -p "${CONDA_ENV_PATH}"

# create the conda environment
CONDA_ENV_PATH="${CURRDIR}"/../parserdev
/opt/python/conda_default/bin/conda create --override-channels -c conda-forge -c ets -c https://nlp.research.ets.org/conda -p "${CONDA_ENV_PATH}" python=3.6 nose coverage crf++ --file conda_requirements.txt

# install the rstfinder package in development mode
"${CONDA_ENV_PATH}"/bin/pip install -e .

# link in the training JSON file that we need for the tests
ln -s /home/nlp-text/dynamic/mheilman/discourse-parsing/rst_discourse_tb_edus_TRAINING_TRAIN.json .

# run the tests and generate the coverage report
"${CONDA_ENV_PATH}"/bin/nosetests --nologcapture tests --with-coverage --cover-package rstfinder --cover-html --with-xunit

--- 
+++ 
@@ -7,11 +7,9 @@
 # remove the conda environment if it already exists
 [[ -d "${CONDA_ENV_PATH}" ]] && /opt/python/conda_default/bin/conda env remove -p "${CONDA_ENV_PATH}"
 
-# create the conda environment using the environment.yaml file
-/opt/python/conda_default/bin/conda env create -f environment.yaml -p "${CONDA_ENV_PATH}" -v
-
-# install nose and coverage in the environment
-/opt/python/conda_default/bin/conda install -p "${CONDA_ENV_PATH}" nose coverage
+# create the conda environment
+CONDA_ENV_PATH="${CURRDIR}"/../parserdev
+/opt/python/conda_default/bin/conda create --override-channels -c conda-forge -c ets -c https://nlp.research.ets.org/conda -p "${CONDA_ENV_PATH}" python=3.6 nose coverage crf++ --file conda_requirements.txt
 
 # install the rstfinder package in development mode
 "${CONDA_ENV_PATH}"/bin/pip install -e .
Update CI file to use environment.yaml
