text:
It seems that STM32L476 is capable for 4-bit SD/MMC bus, but it's not supported.

Describe the set-up
I'm using a NUCLEO-L476RG with Zephyr (f51c8ee739).
Describe the bug
While trying to use a 4-bit SD/MMC bus, the system locks up... when using 1-bit bus the system works fine.
On investigation, it seems that this driver will never communicate the changed bus width with the card, resulting in a breakdown in stm32_sdmmc_access_read().

Am I correct in thinking that the STM32L476 should indeed support 4-bit mode?
Why are only a subset of parts calling HAL_SD_ConfigWideBusOperation()?

How To Reproduce

Connect an SD card to the NUCLEO board

CLK -> PC12 (CN7.3)
CMD -> PD2 (CN7.4)
D0 -> PC8 (CN10.2)
D1 -> PC9 (CN10.1)
D2 -> PC10 (CN7.1)
D3 -> PC11 (CN7.2)

Checkout Zephyr & dependencies
Amend the .../samples/subsys/shell/shell_module/prj.conf as below.
Add the below board file to .../samples/subsys/shell/shell_module/boards/
Build the sample:

cmake -GNinja -S ./zephyr/samples/subsys/shell/shell_module/ -B ./sdmmc_repro -DBOARD=nucleo_l476rg -DCONFIG_LOG_MODE_IMMEDIATE=y
ninja -C ./sdmmc_repro/
st-flash --reset --connect-under-reset write ./sdmmc_repro/zephyr/zephyr.bin 0x08000000

A the Zephyr shell prompt, run fs mount fat /SD:, and note that the system "hangs"

 `.../samples/subsys/shell/shell_module/prj.conf`
diff --git samples/subsys/shell/shell_module/prj.conf samples/subsys/shell/shell_module/prj.conf
index 41d51f8e22..98567901fd 100644
--- samples/subsys/shell/shell_module/prj.conf
+++ samples/subsys/shell/shell_module/prj.conf
@@ -1,5 +1,6 @@
 CONFIG_PRINTK=y
 CONFIG_SHELL=y
+CONFIG_SHELL_STACK_SIZE=16384
 CONFIG_LOG=y
 CONFIG_LOG_CMDS=y
 CONFIG_INIT_STACKS=y
@@ -15,3 +16,24 @@ CONFIG_THREAD_RUNTIME_STATS=y
 CONFIG_THREAD_RUNTIME_STATS_USE_TIMING_FUNCTIONS=y
 CONFIG_STATS=y
 CONFIG_STATS_SHELL=y
+
+CONFIG_HEAP_MEM_POOL_SIZE=8192
+
+CONFIG_I2C=y
+CONFIG_I2C_SHELL=y
+
+CONFIG_DISK_DRIVERS=y
+CONFIG_DISK_DRIVER_SDMMC=y
+CONFIG_SDHC=y
+CONFIG_FILE_SYSTEM=y
+CONFIG_FILE_SYSTEM_SHELL=y
+CONFIG_FILE_SYSTEM_SHELL_TEST_COMMANDS=y
+CONFIG_FILE_SYSTEM_SHELL_BUFFER_SIZE=0x2000
+CONFIG_FAT_FILESYSTEM_ELM=y
+CONFIG_FS_FATFS_MOUNT_MKFS=n
+CONFIG_FS_FATFS_EXFAT=y
+
+CONFIG_CAN=y
+CONFIG_CAN_SHELL=y
+
+CONFIG_GPIO_SHELL=y

 `.../samples/subsys/shell/shell_module/boards/nucleo_l476rg.overlay`
/delete-node/ &spi3;
&sdmmc1 {
       bus-width = <4>;
       clk-div = <0>;
       pinctrl-0 = <
               &sdmmc1_ck_pc12
               &sdmmc1_cmd_pd2
               &sdmmc1_d0_pc8
               &sdmmc1_d1_pc9
               &sdmmc1_d2_pc10
               &sdmmc1_d3_pc11
       >;
       pinctrl-names = "default";
       status = "okay";
};

&clk_msi {
       msi-range = <11>; /* ~48 MHz */
       status = "okay";
};

Hello @attie-argentum,
Thank you for this report, can you please share the reference and type of the SD card.
With regards.

Hi @KRASTM,
I've primarily been using a SanDisk Extreme (32 GB, U3, UHS-I), but have also tried on a fairly generic 2GB Transcend card.
Attie

I've had a lot of problems with consumer cards (Sandisk, Samsung, etc.).
SwissBit references are more stable.
My case is not the truth ^^

ST Internal Reference: 179876

Hello @attie-argentum,
Pending the official fix, there is a work around that may help you to unblock the situation.
First you initialize your SD card with 1 bit bus width within the function HAL_SD_Init(). After that you can use the function HAL_SD_ConfigWideBusOperation with SDMMC_BUS_WIDE_4B.
I hope it will be useful.
With regards.

Hi @KRASTM,
Thanks for the potential workaround... unfortunately this has exposed another (unexpected) issue in SD_FindSCR(), where the loop below appears to exist cleanly after zero or one calls to SDMMC_ReadFIFO().
https://github.com/STMicroelectronics/stm32l4xx_hal_driver/blob/0c6d747f576a62bdeb8b29ed665fbc515b2827ed/Src/stm32l4xx_hal_sd.c#L3961-L3973
For me, this leaves the scr[2] buffer in SD_WideBus_Enable() with the following contents... the first results in HAL_SD_ERROR_REQUEST_NOT_APPLICABLE, and the second results in a crash later in Zephyr (see below), even though there is now a non-zero SCR value present, and it appears to succeed.
00 00 00 00 00 00 00 00

or
00 00 00 00 43 84 35 02

`index=0`, results in 1-bit mode
*** Booting Zephyr OS build zephyr-v3.5.0-4761-g8c80a0693968 ***
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3981 SD_FindSCR(): index: 0
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: SCR
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: 8 bytes @ 0x200035c8
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: ---8<---[ dump begins ]---8<---
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: 0x0000: 00 00 00 00 00 00 00 00                         | ........
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: ---8<---[  dump ends  ]---8<---
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3830 SD_WideBus_Enable(): scr[1U] & ((uint32_t)0x00040000U): 0x00000000
[00:00:00.110,000] <err> stm32_sdmmc: failed to set bus width to 4-bit... (ErrorCode 0x4000000)
Mount /SD:: 0
/SD:: bsize = 512 ; frsize = 32768 ; blocks = 973584 ; bfree = 973127
[00:00:00.181,000] <inf> main: The device is put in USB mass storage mode.

`index=1`, results in 4-bit mode, with later MPU FAULT
*** Booting Zephyr OS build zephyr-v3.5.0-4761-g8c80a0693968 ***
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3981 SD_FindSCR(): index: 1
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: SCR
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: 8 bytes @ 0x200035c8
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: ---8<---[ dump begins ]---8<---
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: 0x0000: 00 00 00 00 43 84 35 02                         | ....C.5.
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3829 SD_WideBus_Enable(): DUMP: ---8<---[  dump ends  ]---8<---
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3830 SD_WideBus_Enable(): scr[1U] & ((uint32_t)0x00040000U): 0x00040000
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3836 SD_WideBus_Enable(): SDMMC_CmdAppCommand(hsd->Instance, (uint32_t)(hsd->SdCard.RelCardAdd << 16U)) --> 0
PK: WEST_TOPDIR/modules/hal/stm32/stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c:3843 SD_WideBus_Enable(): SDMMC_CmdBusWidth(hsd->Instance, 2U) --> 0
Mount /SD:: 0
/SD:: bsize = 512 ; frsize = 32768 ; blocks = 973584 ; bfree = 973127
[00:00:00.201,000] <inf> main: The device is put in USB mass storage mode.

[00:00:01.709,000] <err> os: ***** MPU FAULT *****
[00:00:01.715,000] <err> os:   Stacking error (context area might be not valid)
[00:00:01.723,000] <err> os:   Data Access Violation
[00:00:01.728,000] <err> os:   MMFAR Address: 0x20001abc
[00:00:01.734,000] <err> os: r0/a1:  0xf0040018  r1/a2:  0xf104fdb6  r2/a3:  0xf04f0758
[00:00:01.743,000] <err> os: r3/a4:  0x6da50800 r12/ip:  0xd0da42bd r14/lr:  0xd0d82d00
[00:00:01.752,000] <err> os:  xpsr:  0xf105fc00
[00:00:01.757,000] <err> os: Faulting instruction address (r15/pc): 0xf0044628
[00:00:01.765,000] <err> os: >>> ZEPHYR FATAL ERROR 2: Stack overflow on CPU 0
[00:00:01.773,000] <err> os: Current thread: 0x200002e0 (unknown)
[00:00:01.780,000] <err> os: Halting system

Zephyr Patch
On top of: https://github.com/zephyrproject-rtos/zephyr/commit/f51c8ee73906e7414c7ff1c30e71978437616e71 (and above changes), sdmmc_stm32.c
diff --git drivers/disk/sdmmc_stm32.c drivers/disk/sdmmc_stm32.c
index 71c2c7cab8..fb2edebf7f 100644
--- drivers/disk/sdmmc_stm32.c
+++ drivers/disk/sdmmc_stm32.c
@@ -295,6 +295,11 @@ static int stm32_sdmmc_access_init(struct disk_info *disk)
                return -EIO;
        }

+       err = HAL_SD_ConfigWideBusOperation(&priv->hsd, SDMMC_BUS_WIDE_4B);
+       if (err != HAL_OK) {
+               LOG_ERR("failed to set bus width to 4-bit... (ErrorCode 0x%X)", priv->hsd.ErrorCode);
+       }
+
 #ifdef CONFIG_SDMMC_STM32_HWFC
        stm32_sdmmc_fc_enable(priv);
 #endif

HAL STM32 Patch
On top of https://github.com/zephyrproject-rtos/hal_stm32/commit/22925907a6faeb601fc9a0d8cbb65c4b26d38043, stm32l4xx_hal_sd.c
pk.h is a thin debug / insight tool, here: https://github.com/attie/print-macros/blob/master/pk.h
diff --git stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c
index 62621261..4b0cd122 100644
--- stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c
+++ stm32cube/stm32l4xx/drivers/src/stm32l4xx_hal_sd.c
@@ -1,3 +1,4 @@
+#include <pk.h>
 /**
   ******************************************************************************
   * @file    stm32l4xx_hal_sd.c
@@ -3824,18 +3825,21 @@ static uint32_t SD_WideBus_Enable(SD_HandleTypeDef *hsd)
     return errorstate;
   }

+  PKDUMP(scr, sizeof(scr), "SCR");
+  PKV("0x%08x", scr[1U] & SDMMC_WIDE_BUS_SUPPORT);
+
   /* If requested card supports wide bus operation */
   if((scr[1U] & SDMMC_WIDE_BUS_SUPPORT) != SDMMC_ALLZERO)
   {
     /* Send CMD55 APP_CMD with argument as card's RCA.*/
-    errorstate = SDMMC_CmdAppCommand(hsd->Instance, (uint32_t)(hsd->SdCard.RelCardAdd << 16U));
+    errorstate = PKR(uint32_t, "%d", SDMMC_CmdAppCommand(hsd->Instance, (uint32_t)(hsd->SdCard.RelCardAdd << 16U)));
     if(errorstate != HAL_SD_ERROR_NONE)
     {
       return errorstate;
     }

     /* Send ACMD6 APP_CMD with argument as 2 for wide bus mode */
-    errorstate = SDMMC_CmdBusWidth(hsd->Instance, 2U);
+    errorstate = PKR(uint32_t, "%d", SDMMC_CmdBusWidth(hsd->Instance, 2U));
     if(errorstate != HAL_SD_ERROR_NONE)
     {
       return errorstate;
@@ -3971,6 +3975,7 @@ static uint32_t SD_FindSCR(SD_HandleTypeDef *hsd, uint32_t *pSCR)
       return HAL_SD_ERROR_TIMEOUT;
     }
   }
+  PKV("%d", index);
 #endif /* STM32L4P5xx || STM32L4Q5xx || STM32L4R5xx || STM32L4R7xx || STM32L4R9xx || STM32L4S5xx || STM32L4S7xx || STM32L4S9xx */

   if(__HAL_SD_GET_FLAG(hsd, SDMMC_FLAG_DTIMEOUT))

Hello @attie-argentum,
In fact, I have already tested an example with an eval board, and it's working fine. Juste be sure that the value of BusWide is 1bit within the structure SD_HandleTypeDef while initializing the SD Card. After that you can change the config to 4bit with HAL_SD_ConfigWideBusOperation.
With regards.

Fixed in https://github.com/STMicroelectronics/stm32l4xx_hal_driver/commit/5f7138a2bfb8a7e76a3ac7c3d39314ec365145f8

Many thanks for this patch... I've finally got around to testing it(!) - though unfortunately it still doesn't work with Zephyr.
I manually applied 5f7138a2bfb8a7e76a3ac7c3d39314ec365145f8 onto zephyrproject-rtos/hal_stm32, but no joy.
I will investigate further at some point, but I'm very busy at the moment.
uart:~$ fs mount fat /SD:
Error mounting FAT fs. Error Code [-5]
[00:00:00.562,000] <err> stm32_sdmmc: sd read error 36
[00:00:00.562,000] <err> fs: fs mount error (-5)

I'll raise an issue, as I suspect this may now be a Zephyr driver issue.

authors: KRASTM RJMSTM attie-argentum sromion


text:
🛑 SPCast / Loadbalancer is down

In 2c70912, SPCast / Loadbalancer (https://loadbalancer.sp.radio.fm/) was down:

HTTP code: 0
Response time: 0 ms

Resolved: SPCast / Loadbalancer is back up in 041565a after 9 minutes.

source: gharchive/issue

license: MIT

license_type: permissive

license_source: github-api


text:
BUG: The website is not loading properly

Is there an existing issue for this?

[X] I have searched the existing issues

What went down?
When i loaded the website nothing except the background, google translate button and the chatbot button showed up, this might a possible mixup of files and links leading to the website not loading. I would like to look into this issue[

Record

[X] I agree to follow this project's Code of Conduct
[ ] I'm a GSSOC'24 contributor
[X] I want to work on this issue

@atinder-harika Issue assigned to you

authors: SUGAM-ARORA atinder-harika

repo: SUGAM-ARORA/UniCollab


text:
jenkins/mkcloud: add vproduction job

to be similar to what we want to deploy as production cloud
(cloud.suse.de)
with HA, LDAP, SSL, Ceph

Should we also add this for Cloud8?

Rick: not yet. First, I'd like to get this green for 7 (and maybe 6)

source: gharchive/pull-request

authors: bmwiedemann rsalevsky

repo: SUSE-Cloud/automation

license_source: bigquery


text:
Update reverse.java

now the array is actually reversed in short time complexity without using a second array.

Description

Related Issue

This PR closes #
Motivation and Context

Screenshots (if any)
Types of changes

[ ] Bug fix (non-breaking change which fixes an issue)
[ ] New feature (non-breaking change which adds functionality)
[ ] Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

[ ] My code follows the code style of this project.
[ ] My change requires a change to the documentation.
[ ] I have updated the documentation accordingly.
[ ] I have read the CONTRIBUTING document.

good change

Thanks for the PR! Merged 👍

repo: SVijayB/JavaSpace


text:
🛑 Rahanet Movie AF is down

In ff5354f, Rahanet Movie AF (http://movie.af/) was down:

HTTP code: 403
Response time: 1281 ms

Resolved: Rahanet Movie AF is back up in eee2c8d after 23 minutes.

repo: Saboor-Hakimi/upptime


text:
clean_covariates() will fail if arguments are NULL

There are certainly cases where a user may only have continuous variables OR factor variables in their metadata.
Parts of clean_covariates() function will fail if only one argument is specified.

It looks like this function is failing silently and corrupting the sageseqr package in the process - need to investigate further.

repo: Sage-Bionetworks/sageseqr


text:
feat(data): Rename token category "origin-colors (reference only)" to…

… "origin-color-reference-only".

:tada: This PR is included in version 4.32.0 :tada:
The release is available on:

npm package (@latest dist-tag)
GitHub release

Your semantic-release bot :package::rocket:

authors: carbonci clairedenning

repo: Sage/design-tokens


text:
🛑 Nostr Relay - wss://nostr.oxtr.dev is down

In 00ae3ff, Nostr Relay - wss://nostr.oxtr.dev (https://nostr.oxtr.dev) was down:

HTTP code: 0
Response time: 0 ms

Resolved: Nostr Relay - wss://nostr.oxtr.dev is back up in 24cfbd8.

repo: Sakhalinfox/orangepilldevuptime


text:
🛑 Nostr Relay - wss://brb.io is down

In c9ec280, Nostr Relay - wss://brb.io (https://brb.io) was down:

HTTP code: 0
Response time: 0 ms

Resolved: Nostr Relay - wss://brb.io is back up in f281983.


text:
🛑 Nostr Relay - wss://nostr-pub.wellorder.net is down

In fd812b5, Nostr Relay - wss://nostr-pub.wellorder.net (https://nostr-pub.wellorder.net) was down:

HTTP code: 503
Response time: 10410 ms

Resolved: Nostr Relay - wss://nostr-pub.wellorder.net is back up in efa6766 after 33 days, 11 hours, 47 minutes.


text:
🛑 Nostr Relay - wss://relay.nostr.info is down

In 030c591, Nostr Relay - wss://relay.nostr.info (https://relay.nostr.info) was down:

HTTP code: 0
Response time: 0 ms

Resolved: Nostr Relay - wss://relay.nostr.info is back up in 82c79bd.


text:
fix-services-binding-initialization

ran into this error message when I run:

Xcode build done.                                           12.4s
[VERBOSE-2:ui_dart_state.cc(157)] Unhandled Exception: ServicesBinding.defaultBinaryMessenger was accessed before the binding was initialized.
If you're running an application and need to access the binary messenger before `runApp()` has been called (for example, during plugin initialization), then you need to explicitly call the `WidgetsFlutterBinding.ensureInitialized()` first.
If you're running a test, you can call the `TestWidgetsFlutterBinding.ensureInitialized()` as the first line in your test's `main()` method to initialize the binding.
#0      defaultBinaryMessenger.<anonymous closure> (package:flutter/src/services/binary_messenger.dart:76:7)
#1      defaultBinaryMessenger (package:flutter/src/services/binary_messenger.dart:89:4)
#2      MethodChannel.binaryMessenger (package:flutter/src/services/platform_channel.dart:140:62)
#3      MethodChannel.invokeMethod (package:flutter/src/services/platform_channel.dart:314:35)
#4      SharedPreferences._getSharedPreferencesMap (package:shared_prefere<…>
Syncing files to device iPhone 11 Pro Max...

with flutter version:
flutter doctor -v
[✓] Flutter (Channel stable, v1.12.13+hotfix.5, on Mac OS X 10.15.2 19C57, locale en-US)
    • Flutter version 1.12.13+hotfix.5 at /Users/dv/flutter
    • Framework revision 27321ebbad (4 weeks ago), 2019-12-10 18:15:01 -0800
    • Engine revision 2994f7e1e6
    • Dart version 2.7.0

following the suggestion seems to fix the issue: call WidgetsFlutterBinding.ensureInitialized() prior to calling SharedPreferences.getInstance()
Also added a few files in the .gitignore
ios/Flutter/flutter_export_environment.sh changes on my end i.e export "FLUTTER_ROOT=/Users/sanderlarsen/flutter" becomes export "FLUTTER_ROOT=/Users/dv/flutter"
ios/Podfile.lock changes from
COCOAPODS: 1.7.5
COCOAPODS: 1.8.4
not checking these in

@Salby 👆

Thank you for this contribution :)

authors: Salby dvliman

repo: Salby/jobber


text:
[K-12] Recording a Positive Behavior Case Work Item

Note: FOR INTERNAL USE ONLY. For support questions, please use the EDA Chatter group in The Power of Us Hub.
For feature requests, please use the Ideas tab in The Power of Us Hub.

Do you want to request a feature or report a bug?
Feature
What is the current behavior?
Currently, as a school administrator, I don't have an accurate way of recording a student action that involved one or more students that was a positive interaction.
What is the expected behavior?
As a school administrator I can record a student action that involved one or more students that was a positive interaction so that I can positively impact school culture
What is the motivation / use case for changing the behavior?
Data Integrity
Acceptance Criteria

I can record that a positive interaction occurred

I can put a type or description to the interaction:

Picklist values on a field called Category

Cooperation
Integrity
Leadership
Respect
Teamwork
Other

These are the only values for role when creating a positive behavior interaction record
This will be on the current “Category ” Field

I can record the date the Interaction happened

current functionality on Case Involvement

I can record the Status of the Interaction

Picklist Values

New
Closed (or Completed)

This is the current functionality on Case Involvement using Status field

I can optionally record the location that this interaction happened

This is the current functionality on Case Involvement

I can write a description of the interaction

This is the current functionality on Case Involvement

I can write a subject for the interaction

This is the current functionality on Case Involvement

**lurch: attach W-040060

Tracking W-040060


text:
worker_process: refactor file for readability

The file was kind of hard to read now that I need to work with it so I refactored it a bit.

I've also found a race condition for which I added FIXME comment.


text:
Wrap file-check with try-except (attempt 2)

Bugfix for #50.
I needed to recreate this so that I could be working from a branch based on your develop branch.
Again, lmk of any other changes you'd like me to make here.

To continue our discussion about link-behavior:
Perhaps it would be sensible for the default to follow dropbox's convention, but permit a flag or configuration value to allow following of symlinks? This PR of course isn't the place for that, but I'm just offering my two cents.

Yes, that's a good idea. I typically prefer providing only one (the "best") option, but there really is a use case for syncing folder's outside of the Dropbox directory.

I saw another place in monitor.py where the same logic that caused #50, for when a file gets modified.

Good catch.

I don't quite like that duplicated logic

You can move the code to a private method UpDownSync._wait_for_creation (or any better name) if you like.

Again, lmk of any other changes you'd like me to make here.

One last request: Could you just exit the while loop with break instead of raising an exception here? For now, I prefer raising all exceptions from MaestralApiClient. A broken symlink will be handled there automatically.

Good suggestion. I moved those two while-true loops to a static method.
In the static method, return and break serve the same semantic job, but IMO return is clearer here.
Further, in its current usage now, the try-catch is equivalent to using a break in the original, in-line, PR.
I didn't realize I didn't need to raise the exception there. You're right, I let it go and I still get the broken symlink in the sync errors list.
Thanks for your help on the PR!

Perfect, thank you!

authors: SamSchott michaelbjames

repo: SamSchott/maestral-dropbox


text:
Province link outlines don't update when you end your turn

Click on a province that you own and has an army in it. The neighboring provinces will be outlined, with a thicker than ususal outline to indicate that you can move your army there. Now click on "End Turn". The outline hasn't changed, even though it's no longer your turn and therefore you can't move your army there anymore.
It's a minor graphical issue.

Can confirm this still happens in 4.2

repo: SamTheBlow/grand-strategy-game


text:
feat:Added RunTime Support for Bunjs

fixes:#4
Changes Made:
Added BunJS as a dependency in the project's package.json.
Updated project configurations and build scripts to support BunJS runtime.
Tested various functionalities to ensure compatibility with BunJS.

@techsavvyash sir I know that this pr itself is not enough to solve the issue .I just wanted to Know if there are any changes you suggest .

Hey @vsvishalsharma,
This is PR is not really relevant in any sense to the project, this has a lot of conflicts with the base branch, this does not add the BunJS support to stencil, and we don't require adding BunJS support to samples unless Bun is officially supported by Stencil. The comment where I ask you to try running the samples using Bun was to help you get an understanding of how a Nest project would run using BunJS and then come up with the required changes in the custom components that stencil gives to achieve bun support. I suggest you take up this exercise after a bit more homework and then raise a relevant PR.

Hey @vsvishalsharma
This pull request appears to be somewhat divergent from the project's current focus. It seems to have several conflicts with the base branch, and the addition of BunJS support to Stencil doesn't align with our current priorities, especially since BunJS isn't officially supported by Stencil.
Regarding your attempt to run the samples using BunJS, I appreciate your initiative in exploring how a Nest project would function with BunJS and how we could integrate that with Stencil's custom components. However, it might be beneficial for you to do some additional research and experimentation before submitting a pull request.
In the meantime, let's refocus our efforts on tasks that are more closely aligned with our project goals and priorities. If you have any questions or need further guidance on how to proceed, please feel free to reach out.

@techsavvyash sir i am sorry for the shortcomings
I appreciate the feedback. Could you provide some guidance on how I can address the conflicts with the base branch and ensure that the pull request aligns better with the project's focus? Additionally, are there specific tasks or areas you suggest I explore further to contribute effectively to the project?

Sure @vsvishalsharma,

For resolving conflicts: Rebase/merge your PR with the current main and then make the required changes. [1] and [2] might be good references to learn more about resolving conflics.

For alignment with the ticket requirements, I'd suggest you run the samples with BunJS and see what all problems are arising and need solving, then you checkout the schematics repository which keeps the code for the base application and other code injection in a stencil project, to make the relevant changes that you find during your dry run of running the applications with BunJS. Once those changes are made, then you can go to stencil-cli to make any changes that will be required to incorporate the changes in the schematics.

I'd you approach this ticket in parts:

Figure out how to run a basic NestJS app with BunJS. A good reference link for this has been given in #4.
Add stencil components in the NestJS app running using Bun from step-1 and see if something fails, in case something fails then figure out how to make them compatible with bun and come up with a Plan of Action (POA) of what all the issues that you encounter and how you are going to solve them.
Then take up making the required changes as per the POA in the required repositories, stencil for the custom made components like interceptors, modules and services, schematics for the code injection and base application files and other relevant files and stencil-cli to update the cli that helps bootstrap stencil applications.

Please feel free to reach out in case of any issues or confusions.

@techsavvyash sir,
After reviewing the project structure, I believe the following files play a crucial role in ensuring compatibility with BunJS:
-gulpfile.js and related configuration files: These files are pivotal for managing tasks such as building, testing, and running the Stencil project. Adjustments may be necessary to integrate BunJS into these workflows effectively.
-package.json: This file defines various scripts and dependencies essential for project setup, development, and testing. I anticipate that modifications to script definitions may be necessary to incorporate BunJS-specific commands and configurations.
-Test files: Ensuring that our test suite remains compatible with BunJS is crucial for maintaining the reliability and stability of the Stencil project. Modifications to test files may be required to accommodate any changes made for BunJS integration.
However,I want to know whether my understanding aligns with the actual requirements for BunJS integration. Could you please provide guidance on which specific files within the repository are crucial for ensuring compatibility with BunJS, including any test files that may need adjustment? Your insights would be invaluable as I proceed with this integration.
Considering the primary function of the repository in managing code injection into Stencil projects, I'm curious to know if modifications within the src directory are essential for ensuring compatibility with BunJS. Could you please clarify whether adjustments need to be made within this directory, or if the focus should primarily be on other areas of the repository?

authors: techsavvyash vsvishalsharma

repo: SamagraX-Stencil/stencil


text:
LibCpp2IL: Return empty array if number of read elements is 0

If length is 0, indexing array at 1 is an exception https://github.com/SamboyCoding/Cpp2IL/blob/2f8e5b3fcbdefaf4b851d4234ede44f6c4138efa/LibCpp2IL/Metadata/Il2CppMetadata.cs#L322
Fixes https://github.com/SamboyCoding/Cpp2IL/issues/342

Pull Request Test Coverage Report for Build 11084184650
Details

1 of 2 (50.0%)  changed or added relevant lines in 1 file are covered.
No unchanged relevant lines lost coverage.
Overall coverage increased (+0.005%) to 28.388%

Changes Missing Coverage
Covered Lines
Changed/Added Lines
%

LibCpp2IL/Metadata/Il2CppMetadata.cs
1
2
50.0%

Totals

Change from base Build 11023494789:
0.005%

Covered Lines:
3342

Relevant Lines:
10041

💛  - Coveralls

authors: commonuserlol coveralls


text:
Chat app

Not working any this only register and login were working when i create contact it show s error in c volley and thiserror show on all other features of your application code

Hello
The chat feature works correctly. You don't have to add contacts manually,
it automatically detects contacts from your phone if they are registered on
the app. Call feature is not enabled in the app.
Regards,
Sameet Asadullah
On Sat, 10 Dec 2022 at 07:48, rockstarshaurya @.***>
wrote:

Not working any this only register and login were working when i create
contact it show s error in c volley and thiserror show on all other
features of your application code
—
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You are receiving this because you are subscribed to this thread.Message
ID: @.***>

Necesito ayuda no me funciona el registro siento que estoi realizando mal la conexion a la base de datos lo intente de manera local y ya en la nue pero sige sin funcionar

I’ve described how to install database in the readme file. Please follow it.
On Sat, 31 Dec 2022 at 8:13 PM, issacRC @.***> wrote:

Necesito ayuda no me funciona el registro siento que estoi realizando mal
la conexion a la base de datos lo intente de manera local y ya en la nue
pero sige sin funcionar
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You are receiving this because you commented.Message ID:
@.***>

Cambie a mi direcion ip y no me funciona cree la misma base de datos pero no me funciono
Este apartado no lo entiendo en la parte del host y la llave

authors: SameetAsadullah issacRC rockstarshaurya

repo: SameetAsadullah/Bisto-Chat-Java-PHP


text:
seperate question types

currently all question paths are listed through shortAnswer including some multiplechoice questions eg: in Vocab
While there should be a list of all paths, different question types should have their own lists so that people can request particular question types only.

Done. But not sure that exporting a large number of paths is worth while. Maybe change topicsToTest into an object which includes everything.


text:
MQTT broker cannot handle exception

That seems to be trouble in hbmqtt library, but it was fixed on beerfactory/hbmqtt@f4330985115e3ffb3ccbb102230dfd15bb822a72.
Need to update install_requires or requirements.txt.

Well, I forked beerfactory/hbmqtt before authors accepted PR, fixed issues and made new package pushed to PyPI.

Well, make commit and close the issue.

repo: Samsung-IoT-Academy/mockquitto

license: mit


text:
SVG example causing Stress crash

The example is displayed correctly statically, but causes Stress crash (due to clipping).
<svg viewBox="0 0 500 300" width="500" height="300">
    <defs>
        <rect id="clip_path" x="50" y="100" width="400" height="100" />
    </defs>

    <rect fill="#FF0000" x="0" y="0" width="500" height="300" />

    <clipPath id="clip" fill="white">
        <use xlink:href="#clip_path" />
    </clipPath>

    <circle fill="#0000FF" clip-path="url(#clip)" cx="250" cy="150" r="200" />
</svg>

#293 solved

repo: Samsung/thorvg


text:
🛑 Intelliloop is down

In 48d15f4, Intelliloop (https://www.intelliloop.app) was down:

HTTP code: 0
Response time: 0 ms

Resolved: Intelliloop is back up in f1057ec after 9 minutes.

repo: Sandip-XDS/upptime


text:
🛑 Sancommunity Api is down

In 853655a, Sancommunity Api ($BACKEND_URL) was down:

HTTP code: 400
Response time: 99 ms

Resolved: Sancommunity Api is back up in c899ff7 after 8 minutes.

repo: Sangwas/upptime


text:
Errors in package testing don't cause tests to be marked as failed

I am testing publications in a jasmine package test and an exception from the publication doesn't cause the test to fail...
I20150728-12:54:11.297(-4)? Exception in callback of async function: Error: Match error: Expected string, got undefined
I20150728-12:54:11.297(-4)?   at checkSubtree (/private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/check.js:177:13)
I20150728-12:54:11.297(-4)?   at check (/private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/check.js:50:5)
I20150728-12:54:11.297(-4)?   at Object.Meteor.publish.Orders.find.shopId (/private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/reactioncommerce_core.js:3468:3)
I20150728-12:54:11.297(-4)?   at /private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/matb33_collection-hooks.js:242:21
I20150728-12:54:11.297(-4)?   at [object Object]._.extend.withValue (/private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/meteor.js:989:17)
I20150728-12:54:11.298(-4)?   at Object.Product (/private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/matb33_collection-hooks.js:241:28)
I20150728-12:54:11.298(-4)?   at /private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/local-test_reactioncommerce_core.js:1166:59
I20150728-12:54:11.298(-4)?   at runWithEnvironment (/private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/meteor.js:1041:24)
I20150728-12:54:11.298(-4)?   at Object.<anonymous> (/private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/meteor.js:1054:14)
I20150728-12:54:11.298(-4)?   at Object.<anonymous> (/private/var/folders/4z/ymnx83bx17q8lf38qhhm_gnh0000gn/T/meteor-test-run5o6yyl/.meteor/local/build/programs/server/packages/sanjo_jasmine.js:292:32)
I20150728-12:54:11.298(-4)?   at attemptSync (/Users/josh/.meteor/packages/sanjo_jasmine/.0.15.1.1bof1hq++os+web.browser+web.cordova/npm/node_modules/jasmine-core/lib/jasmine-core/jasmine.js:1759:24)
I20150728-12:54:11.298(-4)?   at QueueRunner.run (/Users/josh/.meteor/packages/sanjo_jasmine/.0.15.1.1bof1hq++os+web.browser+web.cordova/npm/node_modules/jasmine-core/lib/jasmine-core/jasmine.js:1747:9)

The call is just cursor = Meteor.server.publish_handlers["Product"]();

Is the test publicly available?

If you remove the product._id from this line of code and just make an empty call, it will trigger the issue:
https://github.com/reactioncommerce/reaction-core/pull/154/files#diff-0c8cde99bb897255fe42eb5007e41106R63

Also, if I pass an undefined var to expect(data) and make a call on it, like expect(data.title), it will trigger an error, but the test still passes.

Confirmed. I will fix it this week.

Fixed with 0.15.2. It was a regression of 0.15.1. https://github.com/Sanjo/meteor-jasmine/commit/fd2f686c12a2393e057ebe47cac12fff14cf3feb

Duplicate of https://github.com/Sanjo/meteor-jasmine/issues/229

authors: Sanjo queso

repo: Sanjo/meteor-jasmine


text:
Create 3Sum.py

3 Sum problem

@monubucky Thanks for contributing in this repo keep going on🔥 and enjoy hacktoberfest✨


text:
applicaton/fhir+json instead of content type application/fhir+json

We discovered that SaraAlert's API is returning an invalid content type when responding to calls.
We believe application was miss-spelled applicaton in app/controllers/fhir/r4/api_controller.rb.

371
format.json { render json: resource.to_json, status: :created, location: full_url_helper(resource), content_type: 'applicaton/fhir+json' }

372
format.fhir_json { render json: resource.to_json, status: :ok, location: full_url_helper(resource), content_type: 'applicaton/fhir+json' }

373
end

374
end

Thank you
Rhian Resnick
rresnick@fau.edu

Thanks for the comment! We've addressed this issue and merged into master.

authors: Sepiidae holmesie

repo: SaraAlert/SaraAlert


text:
Cross Product Calculator

Enter calculator name -
Cross Product Calculator
Describe calculator functionality -
Find the cross product of two or more vectors.
Under which category you wish to place it -

[ ] Computer Science
[ ] Mathematics
[x] Physics
[ ] Chemistry
[ ] Biology
[ ] Art
[ ] Finance
[ ] Scientific
[ ] Health
[ ] Games/Sports
[x] Let project owner decide
[ ] Suggest a new category - (Answer here)

Hey @syash7202,
Assigned.
You may contribute your code under the folder path -
calc_for_everything\calculators\src\physics\crossProductCalc
Issue completion deadline - 31st Oct 11:00:00 pm IST
NOTE - In case the issue completion deadline is not met, the issue will be assigned to a new participant


text:
Fix: #145 Added Question Paper Builder

Issue Id you have worked upon -
#145
Briefly explain your program logic -
Features added in Question Paper builder-

Add sections in paper
Add MCQs or text type question
Center headings of section if you want
Can enter answers of text based answers and select correct options of MCQs and it store them to show on teachers pdf
Prints only questions in student pdf

Screenshots(Attach 2 screenshots of your own input and output) -
Attach here

###Examiners PDF
examiner_form.pdf

###Students PDF
student_form.pdf

By raising this PR I affirm that -

[x] My code follows the guidelines of this project.

[x] I have performed a self-review of my own code.

[x] I have commented my code.

[x] My code gives the correct output.

[x] I affirm that I strictly follow contributing guidelines and code of conduct.

Congratulations 🎉 @maskboyAvi on your contribution.
Thanks for adding value to this repository. 😊
Let's celebrate this fest 😃 by providing more developers 👨💻👩💻 an opportunity to contribute. Help us make this repository reach far and more by sharing this to your friends and colleagues.
Your efforts can make difference.

I really appreciate the work you have done. 🎉

I really appreciate the work you have done. 🎉

Thanks a lot. I learned a lot in the process.

authors: SarthakKeshari maskboyAvi


text:
fold transitions into renderpass

https://github.com/SaschaWillems/Vulkan/blob/master/base/vulkanexamplebase.cpp#L1571
If you set the initialLayout to UNDEFINED and the finalLayout to Present (while keeping the subpass reference to COLOR_ATTACHMENT_OPTIMAL). And add dependencies from EXTERNAL to 0 and 0 to EXTERNAL with the correct masks. Then you can remove the pre and post present vkCmdPipelineBarrier calls as the renderpass will transition the attached images as required.

Sorry for the long delay, this kinda got lost until I was asked about the present barriers today.
So thanks for hinting me at the directions :+1:
I already have this up and working in the triangle example and will check if it works on all the implementations I have here to test. If it works as expected I'll add this to the other samples too, push the changes and maybe do a small write up on how this actually works as it seems that most of the samples also use dedicated barriers instead of the sub pass dependencies along with the layouts.

Is the explicit render pass dependency necessary? The specification seems to implicitly create this dependency if no dependencies are specified and the alias flag is not passed.

I just read over the current specs (1.0.20) and did not see anything that hints at an implicit dependency, so I'd say yes it's actually necessary (unless you do manual barriers).

@SaschaWillems actually:

If the attachment does not include the VK_ATTACHMENT_DESCRIPTION_MAY_ALIAS_BIT bit and there is no subpass dependency from VK_SUBPASS_EXTERNAL to the first subpass that uses the attachment, then it is as if there were such a dependency with srcStageMask = srcAccessMask = 0 and dstStageMask and dstAccessMask including all relevant bits (all graphics pipeline stages and all access types that use image resources), with the transition executing as part of that dependency. In other words, it may overlap work before the render pass instance and is complete before the subpass begins.

The explicit EXTERNAL to 0 dependency is necessary because the implicit pre-renderpass transition without the dependency is implicitly with a barrier from top-of-the-pipe (it says 0 but logically it's top) while you need it to be from whatever waitStage you set the acquire semaphore to.
In the optimal case that stage will be COLOR_ATTACHMENT_OUTPUT because that is the only other thing that needs to wait until the image is free to be used.
Though the 0 to EXTERNAL isn't necessary because the implicit post-renderpass transition is to bottom of the pipe and the semaphore that gets signaled from that command buffer will only get signaled after all work is done (including those transitions) aka bottom-of-the-pipe.

@ratchetfreak : Thx :+1:  I'm at work right now so I only had time for a quick look and missed that part.

Would the dependency look something like this?
VkSubpassDependency dependency = {};
dependency.srcSubpass = VK_SUBPASS_EXTERNAL;
dependency.dstSubpass = 0;
dependency.srcStageMask = VK_PIPELINE_STAGE_COLOR_ATTACHMENT_OUTPUT_BIT;
dependency.dstStageMask = VK_PIPELINE_STAGE_COLOR_ATTACHMENT_OUTPUT_BIT;
dependency.srcAccessMask = 0;
dependency.dstAccessMask = VK_ACCESS_COLOR_ATTACHMENT_WRITE_BIT;
dependency.dependencyFlags = 0;

I'm not entirely sure about the source stage and access mask because presentation is not part of the graphics pipeline.

I'm at work, so I can't check but out of my head these one should do it (and pass validation). I use them in the updated triangle example (sorry, haven't had the time yet to upload that one).
Initial (which is necessary):
dependency.srcSubpass = VK_SUBPASS_EXTERNAL;
dependency.dstSubpass = 0;
dependency.srcStageMask = VK_PIPELINE_STAGE_BOTTOM_OF_PIPE_BIT;
dependency.dstStageMask = VK_PIPELINE_STAGE_COLOR_ATTACHMENT_OUTPUT_BIT;
dependency.srcAccessMask = VK_ACCESS_MEMORY_READ_BIT;
dependency.dstAccessMask = VK_ACCESS_COLOR_ATTACHMENT_READ_BIT | VK_ACCESS_COLOR_ATTACHMENT_WRITE_BIT;

Final (not necessary due to implicit dependency):
dependency.srcSubpass = 0;
dependency.dstSubpass = VK_SUBPASS_EXTERNAL;
dependency.srcStageMask = VK_PIPELINE_STAGE_COLOR_ATTACHMENT_OUTPUT_BIT;
dependency.dstStageMask = VK_PIPELINE_STAGE_BOTTOM_OF_PIPE_BIT;
dependency.srcAccessMask = VK_ACCESS_COLOR_ATTACHMENT_READ_BIT | VK_ACCESS_COLOR_ATTACHMENT_WRITE_BIT;
dependency.dstAccessMask = VK_ACCESS_MEMORY_READ_BIT;

I wouldn't blindly trust validation on this quite yet, the synchronization validation is still quite incomplete.

I wouldn't blindly trust validation on this quite yet, the synchronization validation is still quite incomplete.

That's right and why I did test these dependencies on NVIDIA (Windows and Android), AMD and Intel and they worked on all of them. So I guess they're okay :wink:

Finally got around replacing the explicit image layout transitions for the attachments in my triangle example.
They're now folded into the render pass using subpass dependencies. I tried to comment as much as possible (see the setupFrameBuffer function. If some of the comments don't make sense then it's probably because it's late at night over here ;)
I'll now start on replacing the explicit transitions for the base class and the other examples too.
Thanks again @ratchetfreak, folding them into the renderpasses makes the code look cleaner and once you get how this works you start to realize how cool that feature is :wink:

Update base classes and all examples to use sub passes for layout transitions instead of explicit barriers.

authors: Overv SaschaWillems ratchetfreak

repo: SaschaWillems/Vulkan


text:
feat(chat): divider component

What this PR does 📖

[x] Add new message divider component
[x] Memoize the first unread message id from num_unread_messages value so that we can render the divider correctly.
[ ] Show formatted duration in divider label

Which issue(s) this PR fixes 🔨

Resolve #295

Special notes for reviewers 🗒
Additional comments 🎤

I would appreciate any help with this issue, I am trying to compute first_unread_message_id from chat.num_unread_messages within src/components/main/compose/messages/mod.rs. How would you go about solving this in Dioxus?

Found a solution by adding a first_unread_message_id field on ConversationInfo:
https://github.com/Satellite-IM/Uplink/blob/b1516c50fab8368dc3ab23e4a677b34ef6e8b81d/src/state/src/lib.rs#L68

Hi Jason! So when I was testing it was working very well on Windows but I had a lot of trouble trying to get it to appear on MacOS when I could get it to appear on MacOS the new message divider would appear under the new message

@phillsatellite Thanks! I fixed the rendering order. But I am not getting the weird behaviour since https://github.com/Satellite-im/Uplink/pull/515/commits/d62bbd1783177b1d37eefae84742b5b3f88f2a98. Can you test it again and see if anything has changed since the last commit?

authors: jasonwoodland phillsatellite

repo: Satellite-im/Uplink


text:
pluginViewFactory is not a function in Vue JS 3

I’m encountering an issue when trying to add plugins like slash or tooltip integration in a Vue 3 project. I’m using the usePluginViewFactory from the@prosemirror-adapter/vuepackage, but I’m getting the following error in the browser's dev tools console:
I tried to display pluginViewFactory in the console, but it’s showing as undefined. I’ve followed the setup steps from the documentation, but it seems that usePluginViewFactory is not working as expected. Below is the code snippet:
import { usePluginViewFactory } from '@prosemirror-adapter/vue';

const pluginViewFactory = usePluginViewFactory();

await useEditor((root) =>
    Editor.make()
      .config((ctx) => {
        ctx.set(rootCtx, root);
        ctx.set(defaultValueCtx, markdown);
        ctx.set(slash.key, {
          view: pluginViewFactory({
            component: Slash
          }),
        })
        ctx.set(tooltip.key, {
          view: pluginViewFactory({
            component: Tooltip
          }),
        })
       ...

Steps to Reproduce:
Set up Milkdown in a Vue 3 project.
Try to import usePluginViewFactory from @prosemirror-adapter/vue.
Attempt to use pluginViewFactory in a plugin like slash or tooltip.
Observe the console where the error pluginViewFactory is not a function is shown.
Expected Behavior: The usePluginViewFactory function should return a valid factory function, allowing me to use it for plugins such as slash and tooltip.
Actual Behavior: The function is undefined, leading to an error and preventing the integration of these plugins.
Environment:
Vue version: ^3.3.4
Milkdown/kit version: ^7.5.5
Browser: Brave1.71.114 Chromium: 130.0.6723.58

Also i tried to comment this part
ctx.set(slash.key, {
          view: pluginViewFactory({
            component: Slash
          }),
        })
        ctx.set(tooltip.key, {
          view: pluginViewFactory({
            component: Tooltip
          }),
        })

and console diplayed me this warning message
injection "Symbol([ProsemirrorAdapter]usePluginViewFactory)" not found.

I tried to copy and paste code from Milkdown Slash Vue example but it gave the same error.

Bruh, the issue was that i didn't wrapped it to the ProsemirrorAdapterProvider
    <ProsemirrorAdapterProvider>
      <MilkdownEditor />
    </ProsemirrorAdapterProvider>

repo: Saul-Mirone/prosemirror-adapter


text:
Create audio book section the resource page and add audio books 🔉

Feature description
Create audio book section the resource page and add audio books 🔉
👀 Have you spent some time to check if this issue has been raised before?

[X] I checked and didn't find similar issue

🏢 Have you read the Code of Conduct?

[X] I have read the Code of Conduct

I want to contribute to this issue under JWOC


text:
Twitch GetAllSubscriptions not returning all data

Method is only returning one record which is for the broadcaster.

It appears the issue is that maxResults is set with a default of 1 in the GetPagedDataResultAsync.   The GetAllSubscriptions method is not passing in a maxResults into GetPagedDataResultAsync therefore only 1 subscriber is returned instead of them all.

repo: SaviorXTanren/StreamingClientLibrary


text:
Update airframe-log to 23.4.4

About this PR
📦 Updates org.wvlet.airframe:airframe-log from 23.3.4 to 23.4.4
📜 GitHub Release Notes - Version Diff
Usage
✅ Please merge!
I'll automatically update this PR to resolve conflicts as long as you don't change it yourself.
If you'd like to skip this version, you can just close this PR. If you have any feedback, just mention me in the comments below.
Configure Scala Steward for your repository with a .scala-steward.conf file.
Have a fantastic day writing Scala!

⚙ Adjust future updates
Add this to your .scala-steward.conf file to ignore future updates of this dependency:
updates.ignore = [ { groupId = "org.wvlet.airframe", artifactId = "airframe-log" } ]

Or, add this to slow down future updates of this dependency:
dependencyOverrides = [{
  pullRequests = { frequency = "30 days" },
  dependency = { groupId = "org.wvlet.airframe", artifactId = "airframe-log" }
}]

labels: library-update, early-semver-minor, semver-spec-minor, commit-count:1

Superseded by #690.

repo: ScalaConsultants/mesmer


text:
Moved prettier to dev-dependencies, fixed scripts

(saves 7,46MB of download on npm install)

Yep, in an npm script, node_modules/.bin is automatically appended to $PATH, so I can totally agree with @Schmavery

Didn't know it, thanks.
I thought if mocha is with node_modules/.bin then I could change prettier too, just for consistency

The tests were added 3 years ago (at least that's what blame shows), when this feature was not present (I guess), but referring to mocha's exact path is also unnecessary.

authors: Bjornskjald forcemagic

repo: Schmavery/facebook-chat-api


text:
⚠ Jenkins Plugins Artifactory has degraded performance

In 3a8863c, Jenkins Plugins Artifactory (https://get.jenkins.io/plugins/artifactory/) experienced degraded performance:

HTTP code: 200
Response time: 1129 ms

Resolved: Jenkins Plugins Artifactory performance has improved in 904e495 after 1 hour, 56 minutes.

repo: Schmitzis/Uptime


text:
⚠ Jenkins Plugins Artifactory has degraded performance

In a52ea3b, Jenkins Plugins Artifactory (https://get.jenkins.io/plugins/artifactory/) experienced degraded performance:

HTTP code: 200
Response time: 1220 ms

Resolved: Jenkins Plugins Artifactory performance has improved in 40a6a9d after 25 minutes.


text:
Request: config options for thirst replenishing items and temperature modifying blocks/armor

I believe that this mod would benefit from allowing players to add custom drinks (from harvestcraft and other mods) for thirst quenching as well as blocks or clothing that can raise or lower temperature. Being able to configure the amount of their effects would also be helpful.

It definitely would benefit. Multiple people have asked about this before. However, I'd have to put this on low priority right now.

authors: Schoperation WrongWeekend

repo: Schoperation/SchopCraft


text:
f commit add File

addFile

Stop spamming. I've reported you.

@Schweinepriester Care to close this? ❤


text:
io.scigraph.owlapi.loader.BatchOwlLoader failure

The process never completes.
Works with an older edu.sdsc branch

cinergiExample .yml.txt

[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building SciGraph - core 1.5-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- exec-maven-plugin:1.4.0:java (default-cli) @ scigraph-core ---
Feb 12, 2016 8:17:56 PM io.scigraph.owlapi.loader.OwlLoaderModule getInserter
INFO: Getting BatchInserter for /var/scigraph-services/graph
dbms.pagecache.memory=3G
dump_configuration=true
Feb 12, 2016 8:18:03 PM io.scigraph.owlapi.loader.BatchOwlLoader load
INFO: Loading ontologies...
Feb 12, 2016 8:18:03 PM io.scigraph.owlapi.loader.OwlOntologyConsumer
INFO: Ontology consumer starting up...
Feb 12, 2016 8:18:04 PM io.scigraph.owlapi.loader.OwlOntologyProducer
INFO: Producer starting up...
Feb 12, 2016 8:18:04 PM io.scigraph.owlapi.loader.OwlOntologyProducer call
INFO: Processing ontology: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
Feb 12, 2016 8:18:04 PM io.scigraph.owlapi.OwlApiUtils loadOntology
INFO: Loading ontology with owlapi: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
Feb 12, 2016 8:18:38 PM io.scigraph.owlapi.OwlApiUtils loadOntology
INFO: Finished loading ontology with owlapi: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
Feb 12, 2016 8:18:38 PM io.scigraph.owlapi.loader.OwlOntologyProducer call
INFO: Adding ontology structure
Feb 12, 2016 8:18:39 PM io.scigraph.owlapi.loader.OwlOntologyProducer call
INFO: Finished adding ontology structure
Feb 12, 2016 8:18:39 PM io.scigraph.owlapi.loader.OwlOntologyProducer queueObjects
INFO: Queueing axioms for: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
Feb 12, 2016 8:18:39 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 0 objects remaining in the queue
Feb 12, 2016 8:18:42 PM io.scigraph.owlapi.loader.OwlOntologyProducer queueObjects
INFO: Finished queueing 1208859 axioms for: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
Feb 12, 2016 8:18:42 PM io.scigraph.owlapi.loader.OwlOntologyProducer call
INFO: Producer shutting down...
Feb 12, 2016 8:18:44 PM io.scigraph.owlapi.OwlApiUtils getTypedLiteralValue
WARNING: Ignoring all literals with unsupported langauge: "fr".
Feb 12, 2016 8:18:51 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 1100000 objects remaining in the queue
Feb 12, 2016 8:18:57 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 1000000 objects remaining in the queue
Feb 12, 2016 8:18:59 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 900000 objects remaining in the queue
Feb 12, 2016 8:19:03 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 800000 objects remaining in the queue
Feb 12, 2016 8:19:06 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 700000 objects remaining in the queue
Feb 12, 2016 8:19:10 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 600000 objects remaining in the queue
Feb 12, 2016 8:19:14 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 500000 objects remaining in the queue
Feb 12, 2016 8:19:19 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 400000 objects remaining in the queue
Feb 12, 2016 8:19:25 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 300000 objects remaining in the queue
Feb 12, 2016 8:19:33 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 200000 objects remaining in the queue
Feb 12, 2016 8:19:39 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 100000 objects remaining in the queue
Feb 12, 2016 8:19:45 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Currently 0 objects remaining in the queue
Feb 12, 2016 8:19:45 PM io.scigraph.owlapi.loader.OwlOntologyConsumer call
INFO: Ontology consumer shutting after processing 1208859 objects...
Feb 12, 2016 8:19:45 PM io.scigraph.neo4j.GraphBatchImpl index
INFO: Starting indexing
Feb 12, 2016 8:20:01 PM io.scigraph.neo4j.GraphBatchImpl index
INFO: Finished indexing
Feb 12, 2016 8:20:09 PM io.scigraph.owlapi.loader.BatchOwlLoader loadOntology
INFO: Postprocessing...
Feb 12, 2016 8:20:11 PM io.scigraph.owlapi.OwlPostprocessor processSomeValuesFrom
INFO: Processing someValuesFrom classes
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.OwlPostprocessor processCategories
INFO: Processing categories
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Specification
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 4 nodes for Specification
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Observation
[WARNING]
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.mojo.exec.ExecJavaMojo$1.run(ExecJavaMojo.java:293)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.util.concurrent.ExecutionException: java.lang.NullPointerException
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at io.scigraph.owlapi.OwlPostprocessor.processCategories(OwlPostprocessor.java:134)
at io.scigraph.owlapi.OwlPostprocessor.postprocess(OwlPostprocessor.java:68)
at io.scigraph.owlapi.loader.BatchOwlLoader.loadOntology(BatchOwlLoader.java:153)
at io.scigraph.owlapi.loader.BatchOwlLoader.load(BatchOwlLoader.java:204)
at io.scigraph.owlapi.loader.BatchOwlLoader.main(BatchOwlLoader.java:234)
... 6 more
Caused by: java.lang.NullPointerException
at org.neo4j.graphdb.traversal.PrimitiveTypeFetcher$1.getId(PrimitiveTypeFetcher.java:36)
at org.neo4j.graphdb.traversal.GloballyUnique.check(GloballyUnique.java:38)
at org.neo4j.graphdb.traversal.AbstractUniquenessFilter.checkFirst(AbstractUniquenessFilter.java:33)
at org.neo4j.kernel.impl.traversal.MonoDirectionalTraverserIterator.isUniqueFirst(MonoDirectionalTraverserIterator.java:87)
at org.neo4j.kernel.impl.traversal.StartNodeTraversalBranch.(StartNodeTraversalBranch.java:39)
at org.neo4j.kernel.impl.traversal.AsOneStartBranch.toBranches(AsOneStartBranch.java:71)
at org.neo4j.kernel.impl.traversal.AsOneStartBranch.(AsOneStartBranch.java:62)
at org.neo4j.kernel.impl.traversal.MonoDirectionalTraverserIterator.(MonoDirectionalTraverserIterator.java:49)
at org.neo4j.kernel.impl.traversal.MonoDirectionalTraversalDescription$2.newInstance(MonoDirectionalTraversalDescription.java:125)
at org.neo4j.kernel.impl.traversal.MonoDirectionalTraversalDescription$2.newInstance(MonoDirectionalTraversalDescription.java:120)
at org.neo4j.kernel.impl.traversal.DefaultTraverser.iterator(DefaultTraverser.java:100)
at io.scigraph.owlapi.CategoryProcessor.call(CategoryProcessor.java:53)
at io.scigraph.owlapi.CategoryProcessor.call(CategoryProcessor.java:32)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
... 1 more
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Software resource
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 3 nodes for Software resource
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Water body
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 280 nodes for Water body
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Process
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 301 nodes for Process
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing atmospheric process
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 57 nodes for atmospheric process
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Feature of interest
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing web service
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 1 nodes for web service
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Temporal Period
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Climate science
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 1 nodes for Climate science
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Geosphere
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 140 nodes for Geosphere
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Hydrosphere
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 15 nodes for Hydrosphere
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Organization
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 3665 nodes for Organization
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Repository
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 10 nodes for Repository
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Earth Science
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Chemistry
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 63 nodes for Chemistry
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Geologic feature
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 78 nodes for Geologic feature
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Biology
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Environmental material
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 912 nodes for Environmental material
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Geographic location
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 24 nodes for Geographic location
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Location
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 1 nodes for Location
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Agriculture
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 3 nodes for Agriculture
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Science Domain
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 375 nodes for Science Domain
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Document
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 4 nodes for Document
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Resource originator
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Event
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 1 nodes for Event
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Habitat
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 11 nodes for Habitat
Feb 12, 2016 8:20:29 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Chemical entity
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 54767 nodes for Chemical entity
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Atmosphere
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 3 nodes for Atmosphere
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Biological material
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 3 nodes for Biological material
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Physiographic Feature
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 273 nodes for Physiographic Feature
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Observed Property
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 353 nodes for Observed Property
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Instrument
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 1409 nodes for Instrument
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Experiment
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 3 nodes for Experiment
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing hydrologic process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 12 nodes for hydrologic process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Meeting
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 1 nodes for Meeting
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing chemical process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 1 nodes for chemical process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Project
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 2 nodes for Project
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Equipment
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 2155 nodes for Equipment
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing tectonic process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 27 nodes for tectonic process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Glacial process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 2 nodes for Glacial process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing ocean process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 34 nodes for ocean process
Feb 12, 2016 8:20:31 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Material entity
Feb 12, 2016 8:20:32 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 57932 nodes for Material entity
Feb 12, 2016 8:20:32 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing dataset
Feb 12, 2016 8:20:32 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 32 nodes for dataset
Feb 12, 2016 8:20:32 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Processsing Human activity
Feb 12, 2016 8:20:32 PM io.scigraph.owlapi.CategoryProcessor call
INFO: Discovered 13 nodes for Human activity
[ stopped after 20 minutes]

[working example using old branch/fork https://github.com/CINERGI/SciGraph ]
mmons-exec/1.3/commons-exec-1.3.jar (54 KB at 2952.6 KB/sec)
==> default: Feb 12, 2016 9:13:58 PM edu.sdsc.scigraph.owlapi.loader.OwlLoaderModule getInserter
==> default: INFO: Getting BatchInserter for /var/scigraph-services/graph
==> default: dbms.pagecache.memory=3G
==> default: dump_configuration=true
==> default: Feb 12, 2016 9:14:02 PM edu.sdsc.scigraph.owlapi.loader.BatchOwlLoader load
==> default: INFO: Loading ontologies...
==> default: Feb 12, 2016 9:14:02 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer
==> default: INFO: Ontology consumer starting up...
==> default: Feb 12, 2016 9:14:02 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyProducer
==> default: INFO: Producer starting up...
==> default: Feb 12, 2016 9:14:02 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyProducer call
==> default: INFO: Processing ontology: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
==> default: Feb 12, 2016 9:14:02 PM edu.sdsc.scigraph.owlapi.OwlApiUtils loadOntology
==> default: INFO: Loading ontology with owlapi: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
==> default: Feb 12, 2016 9:14:25 PM edu.sdsc.scigraph.owlapi.OwlApiUtils loadOntology
==> default: INFO: Finished loading ontology with owlapi: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
==> default: Feb 12, 2016 9:14:25 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyProducer call
==> default: INFO: Adding ontology structure
==> default: Feb 12, 2016 9:14:26 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyProducer call
==> default: INFO: Finished adding ontology structure
==> default: Feb 12, 2016 9:14:26 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyProducer queueObjects
==> default: INFO: Queueing axioms for: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
==> default: Feb 12, 2016 9:14:26 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 0 objects remaining in the queue
==> default: Feb 12, 2016 9:14:29 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyProducer queueObjects
==> default: INFO: Finished queueing 1208859 axioms for: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl
==> default: Feb 12, 2016 9:14:29 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyProducer call
==> default: INFO: Producer shutting down...
==> default: Feb 12, 2016 9:14:29 PM edu.sdsc.scigraph.owlapi.OwlApiUtils getTypedLiteralValue
==> default: WARNING: Ignoring all literals with unsupported langauge: "fr".
==> default: Feb 12, 2016 9:14:34 PM edu.sdsc.scigraph.neo4j.GraphUtil getFragment
==> default: WARNING: Failed to find a fragment for IRI: http://urigen_local_uri/963a1b3b-49f2-4ef9-8f37-5e9cd5403b2a/http://www.ebi.ac.uk/swo/data/SWO_3000069
==> default: Feb 12, 2016 9:14:34 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: WARNING: Failed to find a fragment for IRI: http://urigen_local_uri/963a1b3b-49f2-4ef9-8f37-5e9cd5403b2a/http://www.ebi.ac.uk/swo/data/SWO_3000069
==> default: java.lang.IllegalArgumentException: Failed to find a fragment for IRI: http://urigen_local_uri/963a1b3b-49f2-4ef9-8f37-5e9cd5403b2a/http://www.ebi.ac.uk/swo/data/SWO_3000069
==> default:    at edu.sdsc.scigraph.neo4j.GraphUtil.getFragment(GraphUtil.java:206)
==> default:    at edu.sdsc.scigraph.owlapi.GraphOwlVisitor.getOrCreateNode(GraphOwlVisitor.java:149)
==> default:    at edu.sdsc.scigraph.owlapi.GraphOwlVisitor.visit(GraphOwlVisitor.java:228)
==> default:    at edu.sdsc.scigraph.owlapi.GraphOwlVisitor.visit(GraphOwlVisitor.java:88)
==> default:    at uk.ac.manchester.cs.owl.owlapi.OWLAnnotationAssertionAxiomImpl.accept(OWLAnnotationAssertionAxiomImpl.java:179)
==> default:    at edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer.call(OwlOntologyConsumer.java:70)
==> default:    at edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer.call(OwlOntologyConsumer.java:35)
==> default:    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
==> default:    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
==> default:    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
==> default:    at java.lang.Thread.run(Thread.java:745)
==> default: Feb 12, 2016 9:14:36 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 1100000 objects remaining in the queue
==> default: Feb 12, 2016 9:14:39 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 1000000 objects remaining in the queue
==> default: Feb 12, 2016 9:14:40 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 900000 objects remaining in the queue
==> default: Feb 12, 2016 9:14:42 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 800000 objects remaining in the queue
==> default: Feb 12, 2016 9:14:44 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 700000 objects remaining in the queue
==> default: Feb 12, 2016 9:14:46 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 600000 objects remaining in the queue
==> default: Feb 12, 2016 9:14:49 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 500000 objects remaining in the queue
==> default: Feb 12, 2016 9:14:51 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 400000 objects remaining in the queue
==> default: Feb 12, 2016 9:14:54 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 300000 objects remaining in the queue
==> default: Feb 12, 2016 9:14:57 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 200000 objects remaining in the queue
==> default: Feb 12, 2016 9:15:00 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 100000 objects remaining in the queue
==> default: Feb 12, 2016 9:15:04 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Currently 0 objects remaining in the queue
==> default: Feb 12, 2016 9:15:04 PM edu.sdsc.scigraph.owlapi.loader.OwlOntologyConsumer call
==> default: INFO: Ontology consumer shutting after processing 1208859 objects...
==> default: Feb 12, 2016 9:15:04 PM edu.sdsc.scigraph.neo4j.GraphBatchImpl index
==> default: INFO: Starting indexing
==> default: Feb 12, 2016 9:15:11 PM edu.sdsc.scigraph.neo4j.GraphBatchImpl index
==> default: INFO: Finished indexing
==> default: Feb 12, 2016 9:15:15 PM edu.sdsc.scigraph.owlapi.loader.BatchOwlLoader loadOntology
==> default: INFO: Postprocessing...
==> default: Feb 12, 2016 9:15:16 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processSomeValuesFrom
==> default: INFO: Processing someValuesFrom classes
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing categories
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl/Agricultural_Science=Agriculture
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 3 nodes for http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl/Agricultural_Science=Agriculture
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/ENVO_01000267=Atmosphere
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 3 nodes for http://purl.obolibrary.org/obo/ENVO_01000267=Atmosphere
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/ENVO_01000267=Atmosphere
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 3 nodes for http://purl.obolibrary.org/obo/ENVO_01000267=Atmosphere
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://www.vocabularyserver.com/usgs/index.php?tema=100&/atmospheric-and-climatic-processes=atmospheric process
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 57 nodes for http://www.vocabularyserver.com/usgs/index.php?tema=100&/atmospheric-and-climatic-processes=atmospheric process
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://www.vocabularyserver.com/usgs/index.php?tema=100&/atmospheric-and-climatic-processes=atmospheric process
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 57 nodes for http://www.vocabularyserver.com/usgs/index.php?tema=100&/atmospheric-and-climatic-processes=atmospheric process
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/CHEBI_64392=Biological material
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 3 nodes for http://purl.obolibrary.org/obo/CHEBI_64392=Biological material
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: WARNING: Failed to locate http://www.vocabularyserver.com/usgs/index.php?tema=928&/life-sciences while processing categories
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.bioontology.org/ontology/MESH/D055599=chemical process
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 1 nodes for http://purl.bioontology.org/ontology/MESH/D055599=chemical process
==> default: Feb 12, 2016 9:15:28 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/CHEBI_24431=Chemical entity
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 54767 nodes for http://purl.obolibrary.org/obo/CHEBI_24431=Chemical entity
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl/Chemistry=Chemistry
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 63 nodes for http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl/Chemistry=Chemistry
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl/Chemistry=Chemistry
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 63 nodes for http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl/Chemistry=Chemistry
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://www.vocabularyserver.com/usgs/index.php?tema=276&/climatology=Climate science
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 1 nodes for http://www.vocabularyserver.com/usgs/index.php?tema=276&/climatology=Climate science
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/IAO_0000100=dataset
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 32 nodes for http://purl.obolibrary.org/obo/IAO_0000100=dataset
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/IAO_0000100=dataset
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 32 nodes for http://purl.obolibrary.org/obo/IAO_0000100=dataset
==> default: Feb 12, 2016 9:15:39 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/IAO_0000310=Document
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 4 nodes for http://purl.obolibrary.org/obo/IAO_0000310=Document
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: WARNING: Failed to locate http://www.vocabularyserver.com/usgs/index.php?tema=442&/earth-sciences while processing categories
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/ENVO_00010483=Environmental material
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 912 nodes for http://purl.obolibrary.org/obo/ENVO_00010483=Environmental material
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://www.ebi.ac.uk/efo/EFO_0002694=Experiment
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 3 nodes for http://www.ebi.ac.uk/efo/EFO_0002694=Experiment
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/GAZ_00000448=Geographic location
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 24 nodes for http://purl.obolibrary.org/obo/GAZ_00000448=Geographic location
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://sweet.jpl.nasa.gov/2.3/realmGeol.owl#GeologicFeature=Geologic feature
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 78 nodes for http://sweet.jpl.nasa.gov/2.3/realmGeol.owl#GeologicFeature=Geologic feature
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://sweet.jpl.nasa.gov/2.3/realm.owl#Geosphere=Geosphere
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 140 nodes for http://sweet.jpl.nasa.gov/2.3/realm.owl#Geosphere=Geosphere
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://sweet.jpl.nasa.gov/2.3/realm.owl#Geosphere=Geosphere
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 140 nodes for http://sweet.jpl.nasa.gov/2.3/realm.owl#Geosphere=Geosphere
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://sweet.jpl.nasa.gov/2.3/phenCryo.owl#GlacialProcess=Glacial process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 2 nodes for http://sweet.jpl.nasa.gov/2.3/phenCryo.owl#GlacialProcess=Glacial process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/ENVO_00002036=Habitat
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 11 nodes for http://purl.obolibrary.org/obo/ENVO_00002036=Habitat
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://www.vocabularyserver.com/usgs/index.php?tema=796&/hydrologic-processes=hydrologic process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 12 nodes for http://www.vocabularyserver.com/usgs/index.php?tema=796&/hydrologic-processes=hydrologic process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://sweet.jpl.nasa.gov/2.3/realm.owl#Hydrosphere=Hydrosphere
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 15 nodes for http://sweet.jpl.nasa.gov/2.3/realm.owl#Hydrosphere=Hydrosphere
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://vivoweb.org/ontology/core#Meeting=Meeting
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 1 nodes for http://vivoweb.org/ontology/core#Meeting=Meeting
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: WARNING: Failed to locate http://def.seegrid.csiro.au/isotc211/iso19156/2011/observation#Observation while processing categories
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://www.vocabularyserver.com/usgs/index.php?tema=1150&/ocean-processes=ocean process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 34 nodes for http://www.vocabularyserver.com/usgs/index.php?tema=1150&/ocean-processes=ocean process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://vivoweb.org/ontology/core#Project=Project
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 2 nodes for http://vivoweb.org/ontology/core#Project=Project
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl#Repository=Repository
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 10 nodes for http://hydro10.sdsc.edu/cinergi_ontology/cinergi.owl#Repository=Repository
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.bioontology.org/ontology/MESH/D012984=Software resource
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 3 nodes for http://purl.bioontology.org/ontology/MESH/D012984=Software resource
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C73537=Specification
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 4 nodes for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C73537=Specification
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://www.vocabularyserver.com/usgs/index.php?tema=1651&/tectonic-processes=tectonic process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 27 nodes for http://www.vocabularyserver.com/usgs/index.php?tema=1651&/tectonic-processes=tectonic process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/ENVO_00000063=Water body
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 280 nodes for http://purl.obolibrary.org/obo/ENVO_00000063=Water body
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/ENVO_00000063=Water body
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 280 nodes for http://purl.obolibrary.org/obo/ENVO_00000063=Water body
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://semanticscience.org/resource/SIO_000140=web service
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 1 nodes for http://semanticscience.org/resource/SIO_000140=web service
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: WARNING: Failed to locate http://def.seegrid.csiro.au/isotc211/iso19115/2003/code/Role/originator while processing categories
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://www.vocabularyserver.com/usgs/index.php?tema=1458/sciences=Science Domain
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 375 nodes for http://www.vocabularyserver.com/usgs/index.php?tema=1458/sciences=Science Domain
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/BFO_0000015=Process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 301 nodes for http://purl.obolibrary.org/obo/BFO_0000015=Process
==> default: Feb 12, 2016 9:15:40 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/BFO_0000040=Material entity
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 57932 nodes for http://purl.obolibrary.org/obo/BFO_0000040=Material entity
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/RO_0001015=Location
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 1 nodes for http://purl.obolibrary.org/obo/RO_0001015=Location
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: WARNING: Failed to locate http://def.seegrid.csiro.au/isotc211/iso19108/2002/temporal#Period while processing categories
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.bioontology.org/ontology/MESH/D006802=Human activity
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 13 nodes for http://purl.bioontology.org/ontology/MESH/D006802=Human activity
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: WARNING: Failed to locate http://def.seegrid.csiro.au/isotc211/iso19156/2011/observation#featureOfInterest while processing categories
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://hydro10.sdsc.edu/cinergi_ontology/cinergi#namedProperty=Observed Property
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 353 nodes for http://hydro10.sdsc.edu/cinergi_ontology/cinergi#namedProperty=Observed Property
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.org/NET/c4dm/event.owl#Event=Event
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 1 nodes for http://purl.org/NET/c4dm/event.owl#Event=Event
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://sweet.jpl.nasa.gov/2.3/matrInstrument.owl#Instrument=Instrument
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 1409 nodes for http://sweet.jpl.nasa.gov/2.3/matrInstrument.owl#Instrument=Instrument
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://sweet.jpl.nasa.gov/2.3/matrInstrument.owl#Instrument=Instrument
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 1409 nodes for http://sweet.jpl.nasa.gov/2.3/matrInstrument.owl#Instrument=Instrument
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://sweet.jpl.nasa.gov/2.3/matrEquipment.owl#Equipment=Equipment
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 2155 nodes for http://sweet.jpl.nasa.gov/2.3/matrEquipment.owl#Equipment=Equipment
==> default: Feb 12, 2016 9:15:46 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/OBI_0000245=Organization
==> default: Feb 12, 2016 9:15:47 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 3665 nodes for http://purl.obolibrary.org/obo/OBI_0000245=Organization
==> default: Feb 12, 2016 9:15:47 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processing category: http://purl.obolibrary.org/obo/ENVO_00000191=Physiographic Feature
==> default: Feb 12, 2016 9:15:47 PM edu.sdsc.scigraph.owlapi.OwlPostprocessor processCategories
==> default: INFO: Processsed 273 nodes for http://purl.obolibrary.org/obo/ENVO_00000191=Physiographic Feature
==> default: Feb 12, 2016 9:15:47 PM edu.sdsc.scigraph.owlapi.loader.BatchOwlLoader$PostpostprocessorProvider shutdown
==> default: INFO: 96823 nodes
==> default: Feb 12, 2016 9:15:47 PM edu.sdsc.scigraph.owlapi.loader.BatchOwlLoader$PostpostprocessorProvider shutdown
==> default: INFO: 355168 relationships
==> default: Feb 12, 2016 9:15:47 PM edu.sdsc.scigraph.owlapi.loader.BatchOwlLoader load
==> default: INFO: Loading took 1 minutes

I think that the error comes from your configuration file, the category Observation maps to an non-existing node. In a previous version only a warning is printed:
WARNING: Failed to locate http://def.seegrid.csiro.au/isotc211/iso19156/2011/observation#Observation while processing categories
whereas now we fail on such case.
Can you try to fix the IRI for this category or remove it?

We also added more relationships to traverse when processing the categories:
https://github.com/SciGraph/SciGraph/blob/master/SciGraph-core/src/main/java/io/scigraph/owlapi/CategoryProcessor.java#L53
So this process might take significantly longer to complete. But it should eventually complete and not hang, like that.
Does the CPU and memory seem to be in usage? Or is it really stalled doing nothing?

Okay there was a weird concurrency issue when the provided IRI does not exist.
When it is happening, I put it back as a warning, but in the long run I may throw an exception and stop the load.
Thanks for finding that out!

I'm still seeing a problem with bad thread synchro at commit 9ad933c. The graph load yaml that causes the problem is here. The problem goes away when I comment out the categories section entirely.

There are a few not found IRI, but the load works for me.
Have you pull and recompiled SciGraph?

I had pulled but I forgot to run mvn clean which fixed it. Thanks!

authors: jnguyenx tgbugs valentinedwv

repo: SciGraph/SciGraph


text:
Example with evolution algorithm fails

Hi!
Many thanks for attempting to unify so many optimization packages under a single API! Great work!
I am here to mention that one of your examples with Evolutionary.jl package fails with the error:
MethodError: no method matching optimize(::GalacticOptim.var"#180#184"{OptimizationProblem{true, OptimizationFunction{true, SciMLBase.NoAD, typeof(rosenbrock), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, Vector{Float64}, Vector{Float64}, Vector{Float64}, Nothing, Nothing, Nothing, Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}}}, ::Vector{Float64}, ::Vector{Float64}, ::Vector{Float64}, ::CMAES{Float64}, ::Evolutionary.Options{GalacticOptim.var"#_cb#183"{GalacticOptim.var"#181#185", Base.Iterators.Cycle{Tuple{GalacticOptim.NullData}}}, Random.MersenneTwister})

Perhaps the problem on the Evolutionary.jl side. I opened an issue there.
Regards,

Did you do using Elementary first?

The issue can be circumvented by installing the specific version of Evolutionary.
] add Evolutionary@0.10.1
using GalacticOptim
using Evolutionary

rosenbrock(x, p) =  (p[1] - x[1])^2 + p[2] * (x[2] - x[1]^2)^2
x0 = zeros(2)
p  = [1.0, 100.0]
f = OptimizationFunction(rosenbrock)
prob = GalacticOptim.OptimizationProblem(f, x0, p, lb = [-1.0,-1.0], ub = [1.0,1.0])
sol = solve(prob, Evolutionary.CMAES(μ =40 , λ = 100))

Oh we need to update the wrapper. Hmm. We need to setup subpackages rather than Requires so we get CompatHelper bumps

authors: ChrisRackauckas albertpod