text:
[ADAM-1699] Make GenomicRDD.toXxx method names consistent.

Fixes #1699

Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2340/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains 09875798cf5db255e6f31685f9c8b82c8f65cba6 # timeout=10Checking out Revision 09875798cf5db255e6f31685f9c8b82c8f65cba6 (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 09875798cf5db255e6f31685f9c8b82c8f65cba6First time build. Skipping changelog.Triggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.11,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,2.1.0,centosADAM-prb ? 2.3.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,1.6.1,centos completed with result FAILUREADAM-prb ? 2.6.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.11,2.1.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,1.6.1,centos completed with result FAILUREADAM-prb ? 2.6.0,2.11,2.1.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Coverage remained the same at 83.43% when pulling f905d5787fcca538e39aa3edc34356bef872d4d7 on heuermh:genomicrdd-toxxx into 12c56fdede7063bd87ffd904da6ed33f72961e32 on bigdatagenomics:master.

I will leave this open for 24hrs, in case anyone else has comments.

Coverage decreased (-0.4%) to 82.997% when pulling b9f094fd67965398186555222ea5ab66f93fb7f6 on heuermh:genomicrdd-toxxx into 12c56fdede7063bd87ffd904da6ed33f72961e32 on bigdatagenomics:master.

Test FAILed.
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Test FAILed.

Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2342/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains 58f4e209683008bed4488b3959b7a35d15d00b6a # timeout=10Checking out Revision 58f4e209683008bed4488b3959b7a35d15d00b6a (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 58f4e209683008bed4488b3959b7a35d15d00b6aFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.11,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,2.1.0,centosADAM-prb ? 2.3.0,2.11,1.6.1,centos completed with result FAILUREADAM-prb ? 2.6.0,2.11,1.6.1,centos completed with result FAILUREADAM-prb ? 2.6.0,2.10,1.6.1,centos completed with result FAILUREADAM-prb ? 2.6.0,2.10,2.1.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,2.1.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.11,2.1.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,1.6.1,centos completed with result FAILUREADAM-prb ? 2.6.0,2.11,2.1.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Coverage decreased (-0.5%) to 83.121% when pulling 5346666ea4eaf3d48e0386d210c46edede5d2d5a on heuermh:genomicrdd-toxxx into 511f9253f9e52f8142911c807df2e538d0413cc9 on bigdatagenomics:master.

Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2343/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains 979ae565de7a9b0c80eb1c0b6ee863a60d6b29e9 # timeout=10Checking out Revision 979ae565de7a9b0c80eb1c0b6ee863a60d6b29e9 (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 979ae565de7a9b0c80eb1c0b6ee863a60d6b29e9First time build. Skipping changelog.Triggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.11,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,2.1.0,centosADAM-prb ? 2.3.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.11,2.1.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,2.1.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Coverage decreased (-0.5%) to 83.121% when pulling 2244520b5dc6999735cef7587f8c09c1f0d88992 on heuermh:genomicrdd-toxxx into 511f9253f9e52f8142911c807df2e538d0413cc9 on bigdatagenomics:master.

Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2344/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains ac2fdd4cf3509e8441ed644320a565d5ecf741c1 # timeout=10Checking out Revision ac2fdd4cf3509e8441ed644320a565d5ecf741c1 (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f ac2fdd4cf3509e8441ed644320a565d5ecf741c1First time build. Skipping changelog.Triggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.11,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,2.1.0,centosADAM-prb ? 2.3.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.11,2.1.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,2.1.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Coverage decreased (-0.5%) to 83.107% when pulling 2244520b5dc6999735cef7587f8c09c1f0d88992 on heuermh:genomicrdd-toxxx into 511f9253f9e52f8142911c807df2e538d0413cc9 on bigdatagenomics:master.

Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2345/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains 30386964689b05d73be8657a2ac365517de18d2b # timeout=10Checking out Revision 30386964689b05d73be8657a2ac365517de18d2b (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 30386964689b05d73be8657a2ac365517de18d2bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.11,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,2.1.0,centosADAM-prb ? 2.3.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.11,2.1.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,2.1.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2348/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains bf7eb9edeaed136eed70efb201c515d4ed11352b # timeout=10Checking out Revision bf7eb9edeaed136eed70efb201c515d4ed11352b (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f bf7eb9edeaed136eed70efb201c515d4ed11352b > /home/jenkins/git2/bin/git rev-list 30386964689b05d73be8657a2ac365517de18d2b # timeout=10Triggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.11,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,2.1.0,centosADAM-prb ? 2.3.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.11,2.1.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,2.1.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Coverage remained the same at 83.593% when pulling 3e068683395480f8ee2d396e9948629aa253776b on heuermh:genomicrdd-toxxx into 511f9253f9e52f8142911c807df2e538d0413cc9 on bigdatagenomics:master.

@heuermh I saw you were making changes to this, so I wanted to wait for you to be done before merging. I see you haven't changed this in a few days; is this good to merge from your side, or do you have more work to do here? If you are done, I will re-review/merge.

Sorry, I haven't been able to pass Jenkins yet.

I tried the adam-r build from this branch on a completely new environment
# Build ADAM assembly jar and set up environment variables

$ ./scripts/move_to_spark_2.sh
$ ./scripts/move_to_scala_2.11.sh
$ mvn clean install
$ export SPARK_HOME=/usr/local/Cellar/apache-spark/2.2.0/libexec
$ export ADAM_HOME=`pwd`
$ export ASSEMBLY_DIR="${ADAM_HOME}/adam-assembly/target"
$ export ASSEMBLY_JAR="$(ls -1 "$ASSEMBLY_DIR" | grep "^adam[0-9A-Za-z\_\.-]*\.jar$" | grep -v javadoc | grep -v sources || true)"
export SPARKR_SUBMIT_ARGS="--jars ${ASSEMBLY_DIR}/${ASSEMBLY_JAR} --driver-class-path ${ASSEMBLY_DIR}/${ASSEMBLY_JAR} sparkr-shell"

$ env | grep HOME
SPARK_HOME=/usr/local/Cellar/apache-spark/2.2.0/libexec
ADAM_HOME=/Users/heuermh/working/adam
HOME=/Users/heuermh

$ env | grep ASSEMBLY
ASSEMBLY_JAR=adam-assembly-spark2_2.11-0.23.0-SNAPSHOT.jar
ASSEMBLY_DIR=/Users/heuermh/working/adam/adam-assembly/target

$ echo $SPARKR_SUBMIT_ARGS
--jars /Users/heuermh/working/adam/adam-assembly/target/adam-assembly-spark2_2.11-0.23.0-SNAPSHOT.jar --driver-class-path /Users/heuermh/working/adam/adam-assembly/target/adam-assembly-spark2_2.11-0.23.0-SNAPSHOT.jar sparkr-shell

# Install R and libraries

$ brew install r

$ R CMD INSTALL $SPARK_HOME/R/lib/SparkR
installing to library ‘/usr/local/lib/R/3.4/site-library’
installing *binary* package ‘SparkR’ ...
DONE (SparkR)

$ R -e "install.packages('testthat', repos='http://cran.rstudio.com/')"
...
installing to /usr/local/lib/R/3.4/site-library/testthat/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (testthat)

# Build ADAM with R profile enabled

$ mvn -Pr package
[INFO] Scanning for projects...
...
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: R APIs 0.23.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-r-spark2_2.11 ---
[INFO]
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-r-spark2_2.11 ---
[INFO]
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-r-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO]
[INFO] --- maven-resources-plugin:3.0.1:resources (default-resources) @ adam-r-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /Users/heuermh/working/adam/adam-r/src/main/resources
[INFO]
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-r-spark2_2.11 ---
[INFO] No sources to compile
[INFO]
[INFO] --- exec-maven-plugin:1.5.0:exec (dev-r) @ adam-r-spark2_2.11 ---
* checking for file ‘bdg.adam/DESCRIPTION’ ... OK
* preparing ‘bdg.adam’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building ‘bdg.adam_0.23.0.tar.gz’

[INFO]
[INFO] --- maven-compiler-plugin:3.5.1:compile (default-compile) @ adam-r-spark2_2.11 ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:3.0.1:testResources (default-testResources) @ adam-r-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /Users/heuermh/working/adam/adam-r/src/test/resources
[INFO]
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-r-spark2_2.11 ---
[INFO] No sources to compile
[INFO]
[INFO] --- exec-maven-plugin:1.5.0:exec (test-r) @ adam-r-spark2_2.11 ---
* using log directory ‘/Users/heuermh/working/adam/adam-r/bdg.adam.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* checking for file ‘bdg.adam/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bdg.adam’ version ‘0.23.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bdg.adam’ can be installed ... ERROR
Installation failed.
See ‘/Users/heuermh/working/adam/adam-r/bdg.adam.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR
See
  ‘/Users/heuermh/working/adam/adam-r/bdg.adam.Rcheck/00check.log’
for details.

[ERROR] Command execution failed.
org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1)
	at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404)
	at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166)
	at org.codehaus.mojo.exec.ExecMojo.executeCommandLine(ExecMojo.java:764)
	at org.codehaus.mojo.exec.ExecMojo.executeCommandLine(ExecMojo.java:711)
	at org.codehaus.mojo.exec.ExecMojo.execute(ExecMojo.java:289)
	at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81)
	at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107)
	at org.apache.maven.cli.MavenCli.execute(MavenCli.java:993)
	at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:345)
	at org.apache.maven.cli.MavenCli.main(MavenCli.java:191)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
	at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
	at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] ADAM_2.11 .......................................... SUCCESS [ 11.473 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  5.222 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [05:15 min]
[INFO] ADAM_2.11: APIs for Java ........................... SUCCESS [ 13.573 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [ 45.822 s]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 10.685 s]
[INFO] ADAM_2.11: R APIs .................................. FAILURE [  8.391 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 06:51 min
[INFO] Finished at: 2017-09-06T10:32:05-05:00
[INFO] Final Memory: 46M/434M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.codehaus.mojo:exec-maven-plugin:1.5.0:exec (test-r) on project adam-r-spark2_2.11: Command execution failed.: Process exited with an error: 1 (Exit value: 1) -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :adam-r-spark2_2.11

$ cat /Users/heuermh/working/adam/adam-r/bdg.adam.Rcheck/00install.out
* installing *source* package ‘bdg.adam’ ...
** R
** preparing package for lazy loading
Creating a new generic function for ‘pipe’ in package ‘bdg.adam’
Creating a new generic function for ‘transform’ in package ‘bdg.adam’
Creating a new generic function for ‘save’ in package ‘bdg.adam’
Creating a new generic function for ‘sort’ in package ‘bdg.adam’
** help
No man pages found in package  ‘bdg.adam’
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning: no function found corresponding to methods exports from ‘bdg.adam’ for: ‘toFeatureRDD’
Error: package or namespace load failed for ‘bdg.adam’ in loadNamespace(package, lib.loc):
 in ‘bdg.adam’ methods for export not found: toFeatureRDD
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Users/heuermh/working/adam/adam-r/bdg.adam.Rcheck/bdg.adam’

$ find . -name "*.R" | xargs grep toFeatureRDD

$ find . -name "*.R" | xargs grep toFeatures
./adam-r/bdg.adam/R/generics.R:setGeneric("toFeatures",
./adam-r/bdg.adam/R/generics.R:           function(ardd) { standardGeneric("toFeatures") })
./adam-r/bdg.adam/R/rdd.R:setMethod("toFeatures", signature(ardd = "CoverageRDD"),
./adam-r/bdg.adam/R/rdd.R:              FeatureRDD(sparkR.callJMethod(ardd@jrdd, "toFeatures"))

There are no references to toFeatureRDD.  What am I missing?

The NAMESPACE file says the package exports toFeatureRDD. See https://github.com/bigdatagenomics/adam/blob/28bbb487fc69e68febf900655954e81d4393715b/adam-r/bdg.adam/NAMESPACE#L31
You need your functions that are exported to be in NAMESPACE, otherwise they are internal to the package. I don't see any changes to NAMESPACE.  If you use devtools::document() to generate the documentation, it will update the NAMESPACE file properly as well.

I see, thanks!  So I have to get the prereqs working for #1672 then.
Is there any reason to commit NAMESPACE to git if it is supposed to be generated by roxygen2?  Or alternatively, if at least one of us has that process working, should we commit all the generated docs (NAMESPACE and man directory) to git?

Yes, you would want NAMESPACE to be checked in. It's easier to use roxygen2 to generate it rather than manually. The package build step requires the NAMESPACE even if you don't generate the help files. I see the man folder checked in R packages online, so I think that's reasonable.

+1 @pbashyal-nmdp.

Welcome back!
After the OS upgrade, I can build roxygen2 and devtools.  It reports a couple warnings, I'll try to fix those
$ R -e "library(devtools);document()"

R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(devtools);document()
Updating bdg.adam documentation
Loading bdg.adam
Loading required package: SparkR

Attaching package: ‘SparkR’

The following objects are masked from ‘package:stats’:

    cov, filter, lag, na.omit, predict, sd, var, window

The following objects are masked from ‘package:base’:

    as.data.frame, colnames, colnames<-, drop, endsWith, intersect,
    rank, rbind, sample, startsWith, subset, summary, transform, union

Creating a new generic function for ‘pipe’ in package ‘bdg.adam’
Creating a new generic function for ‘transform’ in package ‘bdg.adam’
Creating a new generic function for ‘save’ in package ‘bdg.adam’
Creating a new generic function for ‘sort’ in package ‘bdg.adam’
Writing NAMESPACE
Writing ADAMContext-class.Rd
...
Warning messages:
1: toVariantContexts-GenotypeRDD-method.Rd is missing name/title. Skipping
2: toVariantContexts-VariantRDD-method.Rd is missing name/title. Skipping

Fixed the warnings.  bdg.adam/man is currently .gitignored.  Should I fix that and git add the man directory in this pull request?

Yes, I suggest adding man directory.

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2358/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains 5ff669791cba41809f2ffdc545d389fb76a4a3d0 # timeout=10Checking out Revision 5ff669791cba41809f2ffdc545d389fb76a4a3d0 (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 5ff669791cba41809f2ffdc545d389fb76a4a3d0 > /home/jenkins/git2/bin/git rev-list bf7eb9edeaed136eed70efb201c515d4ed11352b # timeout=10Triggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.11,2.1.0,centosTriggering ADAM-prb ? 2.3.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,2.1.0,centosADAM-prb ? 2.3.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,2.1.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.11,2.1.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,2.1.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Spark 2.x Scala 2.11 works fine for me locally
...
[INFO] --- exec-maven-plugin:1.5.0:exec (dev-r) @ adam-r-spark2_2.11 ---
* checking for file ‘bdg.adam/DESCRIPTION’ ... OK
* preparing ‘bdg.adam’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building ‘bdg.adam_0.23.0.tar.gz’

[INFO]
[INFO] --- maven-compiler-plugin:3.5.1:compile (default-compile) @ adam-r-spark2_2.11 ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:3.0.1:testResources (default-testResources) @ adam-r-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory working/adam/adam-r/src/test/resources
[INFO]
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-r-spark2_2.11 ---
[INFO] No sources to compile
[INFO]
[INFO] --- exec-maven-plugin:1.5.0:exec (test-r) @ adam-r-spark2_2.11 ---
* using log directory ‘working/adam/adam-r/bdg.adam.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* checking for file ‘bdg.adam/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bdg.adam’ version ‘0.23.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bdg.adam’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Checking should be performed on sources prepared by ‘R CMD build’.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Package in Depends field not imported from: ‘SparkR’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ADAMContext: no visible global function definition for
  ‘sparkR.callJMethod’
ADAMContext: no visible global function definition for
  ‘sparkR.newJObject’
ADAMContext: no visible global function definition for ‘new’
AlignmentRecordRDD: no visible global function definition for ‘new’
CoverageRDD: no visible global function definition for ‘new’
FeatureRDD: no visible global function definition for ‘new’
FragmentRDD: no visible global function definition for ‘new’
GenotypeRDD: no visible global function definition for ‘new’
NucleotideContigFragmentRDD: no visible global function definition for
  ‘new’
VariantContextRDD: no visible global function definition for ‘new’
VariantRDD: no visible global function definition for ‘new’
aggregatedCoverage,CoverageRDD: no visible global function definition
  for ‘sparkR.callJMethod’
collapse,CoverageRDD: no visible global function definition for
  ‘sparkR.callJMethod’
countKmers,AlignmentRecordRDD-numeric: no visible global function
  definition for ‘new’
countKmers,AlignmentRecordRDD-numeric: no visible global function
  definition for ‘sparkR.callJMethod’
coverage,CoverageRDD: no visible global function definition for
  ‘sparkR.callJMethod’
flankAdjacentFragments,NucleotideContigFragmentRDD-numeric: no visible
  global function definition for ‘sparkR.callJMethod’
flatten,CoverageRDD: no visible global function definition for
  ‘sparkR.callJMethod’
loadAlignments,ADAMContext-character: no visible global function
  definition for ‘sparkR.callJMethod’
loadContigFragments,ADAMContext-character: no visible global function
  definition for ‘sparkR.callJMethod’
loadCoverage,ADAMContext-character: no visible global function
  definition for ‘sparkR.callJMethod’
loadFeatures,ADAMContext-character: no visible global function
  definition for ‘sparkR.callJMethod’
loadFragments,ADAMContext-character: no visible global function
  definition for ‘sparkR.callJMethod’
loadGenotypes,ADAMContext-character: no visible global function
  definition for ‘sparkR.callJMethod’
loadVariants,ADAMContext-character: no visible global function
  definition for ‘sparkR.callJMethod’
markDuplicates,AlignmentRecordRDD: no visible global function
  definition for ‘sparkR.callJMethod’
markDuplicates,FragmentRDD: no visible global function definition for
  ‘sparkR.callJMethod’
pipe,GenomicRDD-character-character-character-character: no visible
  global function definition for ‘sparkR.callJStatic’
pipe,GenomicRDD-character-character-character-character: no visible
  global function definition for ‘sparkR.callJMethod’
realignIndels,AlignmentRecordRDD-ANY: no visible global function
  definition for ‘sparkR.callJStatic’
realignIndels,AlignmentRecordRDD-ANY: no visible global function
  definition for ‘sparkR.callJMethod’
realignIndels,AlignmentRecordRDD-VariantRDD: no visible global function
  definition for ‘sparkR.callJStatic’
realignIndels,AlignmentRecordRDD-VariantRDD: no visible global function
  definition for ‘sparkR.callJMethod’
recalibrateBaseQualities,AlignmentRecordRDD-VariantRDD-character: no
  visible global function definition for ‘sparkR.callJStatic’
recalibrateBaseQualities,AlignmentRecordRDD-VariantRDD-character: no
  visible global function definition for ‘sparkR.callJMethod’
save,AlignmentRecordRDD-character: no visible global function
  definition for ‘sparkR.callJMethod’
save,CoverageRDD-character: no visible global function definition for
  ‘sparkR.callJMethod’
save,FeatureRDD-character: no visible global function definition for
  ‘sparkR.callJMethod’
save,FragmentRDD-character: no visible global function definition for
  ‘sparkR.callJMethod’
save,NucleotideContigFragmentRDD-character: no visible global function
  definition for ‘sparkR.callJMethod’
saveAsParquet,GenotypeRDD-character: no visible global function
  definition for ‘sparkR.callJMethod’
saveAsParquet,VariantRDD-character: no visible global function
  definition for ‘sparkR.callJMethod’
saveAsSam,AlignmentRecordRDD-character: no visible global function
  definition for ‘sparkR.callJStatic’
saveAsSam,AlignmentRecordRDD-character: no visible global function
  definition for ‘sparkR.callJMethod’
saveAsVcf,VariantContextRDD-character: no visible global function
  definition for ‘sparkR.callJStatic’
saveAsVcf,VariantContextRDD-character: no visible global function
  definition for ‘sparkR.callJMethod’
sort,GenomicRDD: no visible global function definition for
  ‘sparkR.callJMethod’
sortLexicographically,GenomicRDD: no visible global function definition
  for ‘sparkR.callJMethod’
sortReadsByReferencePosition,AlignmentRecordRDD: no visible global
  function definition for ‘sparkR.callJMethod’
sortReadsByReferencePositionAndIndex,AlignmentRecordRDD: no visible
  global function definition for ‘sparkR.callJMethod’
toCoverage,AlignmentRecordRDD: no visible global function definition
  for ‘sparkR.callJMethod’
toCoverage,FeatureRDD: no visible global function definition for
  ‘sparkR.callJMethod’
toDF,GenomicDataset: no visible global function definition for
  ‘sparkR.callJMethod’
toDF,GenomicDataset: no visible global function definition for ‘new’
toFeatures,CoverageRDD: no visible global function definition for
  ‘sparkR.callJMethod’
toFragments,AlignmentRecordRDD: no visible global function definition
  for ‘sparkR.callJMethod’
toReads,FragmentRDD: no visible global function definition for
  ‘sparkR.callJMethod’
toVariantContexts,GenotypeRDD: no visible global function definition
  for ‘sparkR.callJMethod’
toVariantContexts,VariantRDD: no visible global function definition for
  ‘sparkR.callJMethod’
transform,GenomicRDD-function: no visible global function definition
  for ‘sparkR.callJMethod’
transmute,GenomicRDD-function-character: no visible global function
  definition for ‘sparkR.callJStatic’
transmute,GenomicRDD-function-character: no visible global function
  definition for ‘new’
transmute,GenomicRDD-function-character: no visible global function
  definition for ‘sparkR.callJMethod’
wrapTransformation,GenomicRDD-function: no visible global function
  definition for ‘sparkR.callJStatic’
Undefined global functions or variables:
  new sparkR.callJMethod sparkR.callJStatic sparkR.newJObject
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘ADAMContext’ ‘aggregatedCoverage’ ‘collapse’ ‘countKmers’ ‘coverage’
  ‘flankAdjacentFragments’ ‘flatten’ ‘loadAlignments’
  ‘loadContigFragments’ ‘loadCoverage’ ‘loadFeatures’ ‘loadFragments’
  ‘loadGenotypes’ ‘loadVariants’ ‘markDuplicates’ ‘pipe’
  ‘realignIndels’ ‘recalibrateBaseQualities’ ‘save’ ‘saveAsParquet’
  ‘saveAsSam’ ‘saveAsVcf’ ‘sort’ ‘sortLexicographically’
  ‘sortReadsByReferencePosition’ ‘sortReadsByReferencePositionAndIndex’
  ‘toCoverage’ ‘toDF’ ‘toFeatures’ ‘toFragments’ ‘toReads’
  ‘toVariantContexts’ ‘transform’ ‘transmute’
Undocumented S4 classes:
  ‘CoverageRDD’ ‘AlignmentRecordRDD’ ‘NucleotideContigFragmentRDD’
  ‘GenomicDataset’ ‘FragmentRDD’ ‘VariantContextRDD’ ‘VariantRDD’
  ‘GenotypeRDD’ ‘GenomicRDD’ ‘FeatureRDD’
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'aggregatedCoverage,CoverageRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'collapse,CoverageRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'countKmers,AlignmentRecordRDD,numeric-method'
  ‘ardd’

Undocumented arguments in documentation object 'coverage,CoverageRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'flankAdjacentFragments,NucleotideContigFragmentRDD,numeric-method'
  ‘ardd’

Undocumented arguments in documentation object 'flatten,CoverageRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'markDuplicates,AlignmentRecordRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'markDuplicates,FragmentRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'pipe,GenomicRDD,character,character,character,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'realignIndels,AlignmentRecordRDD,ANY-method'
  ‘ardd’ ‘maxIndelSize’
Documented arguments not in \usage in documentation object 'realignIndels,AlignmentRecordRDD,ANY-method':
  ‘int’

Undocumented arguments in documentation object 'realignIndels,AlignmentRecordRDD,VariantRDD-method'
  ‘ardd’ ‘maxIndelSize’
Documented arguments not in \usage in documentation object 'realignIndels,AlignmentRecordRDD,VariantRDD-method':
  ‘int’

Undocumented arguments in documentation object 'recalibrateBaseQualities,AlignmentRecordRDD,VariantRDD,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'save,AlignmentRecordRDD,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'save,CoverageRDD,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'save,FeatureRDD,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'save,FragmentRDD,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'save,NucleotideContigFragmentRDD,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'saveAsParquet,GenotypeRDD,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'saveAsParquet,VariantRDD,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'saveAsSam,AlignmentRecordRDD,character-method'
  ‘ardd’

Undocumented arguments in documentation object 'saveAsVcf,VariantContextRDD,character-method'
  ‘ardd’ ‘disableFastConcat’
Documented arguments not in \usage in documentation object 'saveAsVcf,VariantContextRDD,character-method':
  ‘disableFastConcat:’

Undocumented arguments in documentation object 'sort,GenomicRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'sortLexicographically,GenomicRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'sortReadsByReferencePosition,AlignmentRecordRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'sortReadsByReferencePositionAndIndex,AlignmentRecordRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'toCoverage,AlignmentRecordRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'toCoverage,FeatureRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'toFeatures,CoverageRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'toFragments,AlignmentRecordRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'toReads,FragmentRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'toVariantContexts,GenotypeRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'toVariantContexts,VariantRDD-method'
  ‘ardd’

Undocumented arguments in documentation object 'transform,GenomicRDD,function-method'
  ‘ardd’

Undocumented arguments in documentation object 'transmute,GenomicRDD,function,character-method'
  ‘ardd’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 3 NOTEs
See
  ‘working/adam/adam-r/bdg.adam.Rcheck/00check.log’
for details.

Coverage decreased (-0.5%) to 83.121% when pulling a2d3e5cee99746b778f654580b1e067644e9d38f on heuermh:genomicrdd-toxxx into 511f9253f9e52f8142911c807df2e538d0413cc9 on bigdatagenomics:master.

Coverage remained the same at 83.593% when pulling a2d3e5cee99746b778f654580b1e067644e9d38f on heuermh:genomicrdd-toxxx into 511f9253f9e52f8142911c807df2e538d0413cc9 on bigdatagenomics:master.

Coverage decreased (-0.5%) to 83.05% when pulling 99d4d8e49d7e3ff5f9647b6d934fc68373b9816a on heuermh:genomicrdd-toxxx into 511f9253f9e52f8142911c807df2e538d0413cc9 on bigdatagenomics:master.

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2359/
Test PASSed.

Test PASSed.

Good to go from my end, please let me know how you'd like me to squash commits.
There is a possible lingering issue with .gitignore, in that *.adam* accidentally correctly hits some R related stuff, e.g.
$ git check-ignore adam-r/bdg.adam_0.23.0.tar.gz --verbose
.gitignore:10:*.adam*	adam-r/bdg.adam_0.23.0.tar.gz
adam genomicrdd-toxxx!

$ git check-ignore adam-r/bdg.adam.Rcheck/ --verbose
.gitignore:10:*.adam*	adam-r/bdg.adam.Rcheck/

Thanks @heuermh! I'll make a pass today. WRT:

please let me know how you'd like me to squash commits.

My thought is squash everything down except for the commit that checks in the R docs. That said, I'm not 100% sold on checking in the R docs; they're autogenerated in the same way that Javadoc/Scaladoc are, and they're not critical for building in the way that the NAMESPACE file is.

There is a possible lingering issue with .gitignore, in that .adam accidentally correctly hits some R related stuff, e.g.

Ah! Thanks for sorting that out; I'd been seeing that for a while and wondering what was causing it... What we should have is a .gitignore in adam-r that contains !bdg.adam. Can you add that here in a separate commit?

I've seen Rd files in man directory checked into the repository for R packages. Eg. roxygen2 https://github.com/klutometis/roxygen and devtools https://github.com/hadley/devtools

... and they're not critical for building in the way that the NAMESPACE file is.

I'm not sure about that, the Jenkins build kept failing until I checked them in.
And now that scripts/jenkins-test uses conda and library path stuff for the python and R builds, I'm not sure if I should try to run it locally.  If the Jenkins build hadn't passed this morning, I was going to spin up an EC2 instance and try running there.

What we should have is a .gitignore in adam-r that contains !bdg.adam. Can you add that here in a separate commit?

I added !bdg.adam to the .gitignore at the project root, I suppose it would still work at adam-r.
It can't be at adam-r/bdg.adam or Rcheck will complain (see commit 758dfe1a153256135e5103a2b219bcd1e5e8299b).

... and they're not critical for building in the way that the NAMESPACE file is.

I'm not sure about that, the Jenkins build kept failing until I checked them in.

Hmm, odd. Can you point me at a build where this was failing?

I added !bdg.adam to the .gitignore at the project root, I suppose it would still work at adam-r.

Ah, I hadn't seen you make that add. I'm OK with it at the project root.

This is the most recent failed Jenkins build
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2358/
but whatever error message(s) Rcheck provided are lost when the stuff in /tmp is deleted
* checking whether package 'bdg.adam' can be installed ... ERROR
Installation failed.
See '/tmp/adamTestBpGEYH9/deleteMePleaseThisIsNoLongerNeeded/adam-r/bdg.adam.Rcheck/00install.out' for details.

Coverage decreased (-0.5%) to 83.05% when pulling 1252518a2e7212482c9dec74fb923d338e2ba48a on heuermh:genomicrdd-toxxx into 28bbb487fc69e68febf900655954e81d4393715b on bigdatagenomics:master.

Coverage decreased (-0.5%) to 83.05% when pulling 1252518a2e7212482c9dec74fb923d338e2ba48a on heuermh:genomicrdd-toxxx into 28bbb487fc69e68febf900655954e81d4393715b on bigdatagenomics:master.

Test PASSed.
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Test PASSed.

@heuermh can you push a commit that:

Removes the generated R docs
Disable -e right before running the R CMD INSTALL
Cat bdg.adam.Rcheck/00install.out

Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2382/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains 9a742bfe92342744df9af9b2f1fa2197105ebe07 # timeout=10Checking out Revision 9a742bfe92342744df9af9b2f1fa2197105ebe07 (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 9a742bfe92342744df9af9b2f1fa2197105ebe07 > /home/jenkins/git2/bin/git rev-list b0a9d9e0e1a4f5703c66e011b5be6e0207485197 # timeout=10Triggering ADAM-prb ? 2.6.2,2.11,1.6.3,centosTriggering ADAM-prb ? 2.7.3,2.11,1.6.3,centosTriggering ADAM-prb ? 2.7.3,2.11,2.2.0,centosTriggering ADAM-prb ? 2.7.3,2.10,1.6.3,centosTriggering ADAM-prb ? 2.6.2,2.10,1.6.3,centosTriggering ADAM-prb ? 2.6.2,2.10,2.2.0,centosTriggering ADAM-prb ? 2.7.3,2.10,2.2.0,centosTriggering ADAM-prb ? 2.6.2,2.11,2.2.0,centosADAM-prb ? 2.6.2,2.11,1.6.3,centos completed with result SUCCESSADAM-prb ? 2.7.3,2.11,1.6.3,centos completed with result SUCCESSADAM-prb ? 2.7.3,2.11,2.2.0,centos completed with result SUCCESSADAM-prb ? 2.7.3,2.10,1.6.3,centos completed with result FAILUREADAM-prb ? 2.6.2,2.10,1.6.3,centos completed with result SUCCESSADAM-prb ? 2.6.2,2.10,2.2.0,centos completed with result FAILUREADAM-prb ? 2.7.3,2.10,2.2.0,centos completed with result FAILUREADAM-prb ? 2.6.2,2.11,2.2.0,centos completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

@fnothaft Not sure what is going on with the Jenkins builds here.  Perhaps I borked something when rebasing?

Can you make sure you've picked up the Spark 2.2/Hadoop 2.7 build changes?

Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2383/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains 05ecc00d7310b13f72b833b4933bfb3cd6c78845 # timeout=10Checking out Revision 05ecc00d7310b13f72b833b4933bfb3cd6c78845 (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f 05ecc00d7310b13f72b833b4933bfb3cd6c78845 > /home/jenkins/git2/bin/git rev-list 9a742bfe92342744df9af9b2f1fa2197105ebe07 # timeout=10Triggering ADAM-prb ? 2.6.2,2.11,1.6.3,centosTriggering ADAM-prb ? 2.7.3,2.11,1.6.3,centosTriggering ADAM-prb ? 2.7.3,2.11,2.2.0,centosTriggering ADAM-prb ? 2.7.3,2.10,1.6.3,centosTriggering ADAM-prb ? 2.6.2,2.10,1.6.3,centosTriggering ADAM-prb ? 2.6.2,2.10,2.2.0,centosTriggering ADAM-prb ? 2.7.3,2.10,2.2.0,centosTriggering ADAM-prb ? 2.6.2,2.11,2.2.0,centosADAM-prb ? 2.6.2,2.11,1.6.3,centos completed with result FAILUREADAM-prb ? 2.7.3,2.11,1.6.3,centos completed with result FAILUREADAM-prb ? 2.7.3,2.11,2.2.0,centos completed with result FAILUREADAM-prb ? 2.7.3,2.10,1.6.3,centos completed with result FAILUREADAM-prb ? 2.6.2,2.10,1.6.3,centos completed with result FAILUREADAM-prb ? 2.6.2,2.10,2.2.0,centos completed with result FAILUREADAM-prb ? 2.7.3,2.10,2.2.0,centos completed with result FAILUREADAM-prb ? 2.6.2,2.11,2.2.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2384/Build result: FAILURE[...truncated 15 lines...] > /home/jenkins/git2/bin/git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > /home/jenkins/git2/bin/git rev-parse origin/pr/1700/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a -v --no-abbrev --contains a31f8648428ba1898112eb3a8fefdb6462f52da6 # timeout=10Checking out Revision a31f8648428ba1898112eb3a8fefdb6462f52da6 (origin/pr/1700/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f a31f8648428ba1898112eb3a8fefdb6462f52da6 > /home/jenkins/git2/bin/git rev-list 05ecc00d7310b13f72b833b4933bfb3cd6c78845 # timeout=10Triggering ADAM-prb ? 2.6.2,2.11,1.6.3,centosTriggering ADAM-prb ? 2.7.3,2.11,1.6.3,centosTriggering ADAM-prb ? 2.7.3,2.11,2.2.0,centosTriggering ADAM-prb ? 2.7.3,2.10,1.6.3,centosTriggering ADAM-prb ? 2.6.2,2.10,1.6.3,centosTriggering ADAM-prb ? 2.6.2,2.10,2.2.0,centosTriggering ADAM-prb ? 2.7.3,2.10,2.2.0,centosTriggering ADAM-prb ? 2.6.2,2.11,2.2.0,centosADAM-prb ? 2.6.2,2.11,1.6.3,centos completed with result FAILUREADAM-prb ? 2.7.3,2.11,1.6.3,centos completed with result FAILUREADAM-prb ? 2.7.3,2.11,2.2.0,centos completed with result FAILUREADAM-prb ? 2.7.3,2.10,1.6.3,centos completed with result FAILUREADAM-prb ? 2.6.2,2.10,1.6.3,centos completed with result FAILUREADAM-prb ? 2.6.2,2.10,2.2.0,centos completed with result FAILUREADAM-prb ? 2.7.3,2.10,2.2.0,centos completed with result FAILUREADAM-prb ? 2.6.2,2.11,2.2.0,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

Jenkins, retest this please.

Test PASSed.
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Test PASSed.

I'm going to squash all but the jenkins-test changes into a single commit and hope for the best.

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Test PASSed.

Jenkins, retest this please.

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Test PASSed.

Merged! Thanks @heuermh!

authors: AmplabJenkins coveralls fnothaft heuermh pbashyal-nmdp

repo: bigdatagenomics/adam


text:
[Not bug] - [Idea] - Touch bar

Hey!
I saw your touchscreen project this is a great idea made me think about simulating the Touch Bar. If you need only one specific icon set, you could print it and the camera (thats already on because of touch sceen) could grab wich one is hidden by your finger. If more than one is hidden it doesnt do anything so if you are using the touchscreen it doesnt get confused.
Or you could just print numbers or icons or QR code on it and you could change the fake touchbar layout in the software mapping.
Best regards,
Tom

Update:
You could use magnetic icons to variable the fake touchbar so it would be easily customizable

source: gharchive/issue

repo: bijection/sistine

license: MIT

license_type: permissive

license_source: github-api


text:
es6 import 无法起播

下面导入无法起播
import flvJs from 'flv.js';
如果换成dist目录可以正常起播
import flvJs from 'flv.js/dist/flv.js';
建议去掉package.json里的module配置。。

@samao  换成dist目录在安卓的微信浏览器上也是不行，会报错。而其他浏览器可以。

#338

authors: samao tiyunchen zeybar


text:
clear BIMDataMenu

Delete complex logical in BIMDataMenu only  used for GroupImport in platform.
Delete some slots (used sometimes but not necessary )

[x] I have tested my component
[x] I have updated the documentation or there is no documentation needed

:tada: This PR is included in version 2.0.0-rc.11 :tada:
The release is available on:

npm package (@next dist-tag)
GitHub release

Your semantic-release bot :package::rocket:

source: gharchive/pull-request

authors: Bimdata-io LrxGaelle

repo: bimdata/design-system


text:
Add socMax for electric/hybrid cars

Heloo
after 20.2.2020   - Dead:
https://github.com/jupe76/bmwcdapi
https://github.com/frankjoke/iobroker.bmw
https://github.com/edent/BMW-i-Remote
https://github.com/ipv6freely/bmw2018
I miss the maximum battery capacity information.  -  socmax.
this information can be found here:
[root@CL-ITNK-BMW ~]#  ./bmw/bmw.py
https://b2vapi.bmwgroup.com/api/vehicle/navigation/v1/WBY1Z41000VZXXXXX
<Response [200]>
{'latitude': 51.333383, 'longitude': 17.333973, 'isoCountryCode': 'CZE', 'auxPowerRegular': 1.4, 'auxPowerEcoPro': 1.2, 'auxPowerEcoProPlus': 0.4, 'soc': 11.439000129699707, 'eco': '659,489,421,421,402,475,632,6d0,76f,8ac,9e9', 'norm': '698,4b6,4ac,4ac,41a,48f,632,6d0,76f,8ac,9e9', 'ecoEv': '659,489,421,421,402,475,632,6d0,76f,8ac,9e9', 'normEv': '698,4b6,4ac,4ac,41a,48f,632,6d0,76f,8ac,9e9', 'vehicleMass': '1400', 'driveTrain': 'bev_rex', 'pendingUpdate': False, 'vehicleTracking': True, 'socmax': 16.9, 'kaccReg': '2412000', 'kdecReg': '3240000', 'kaccEco': '2520000', 'kdecEco': '3240000', 'kup': '3132000', 'kdown': '3384000'}
[root@CL-ITNK-BMW ~]#
Please please add infomatin to this project bimmer_connected.
My bmw.py from https://github.com/ipv6freely/bmw2018  and modify for my used.
I want to use bimmer_connected
Thanks thanks Havrla

In addition to socMax, this feed also produces the current state of charge in KwH 'soc' which could also be useful to keep track of.
I've been digging around in the code base and I'll see if I can make a pull request for this feature if I can get it running.  Thanks for the helpful hint on where this data is still available @Havria
Appreciations for the hard work on this project and continued development!

I'll have a look if theres the possibility to implement this. On issue comes with #140 as this changes the API and auth endpoints (so we cannot just use the "old" OAuth tokens anymore).
I'll check and come back to you.

Heloo
Please please add SOC battery.
Version bimmer-connected-0.7.7, does not have SOC yet, I would like to switch to these libraries.
thanks  thanks   ...

I am testing ways how to integrate soc and socmax at the moment with this code. Are there any news on PR #191 ? Is this going to be merged soon, so should new code base on this code?
Are there suggestions on how where to put the soc and socmax?

This is supported now in master.

Very nice, thank you!
How to get socMax into home-assistant? Should ha_custom_component create a sensor if I am using the right version?

We need to update the HA component (and the custom component) as well to reflect the new attribute structure (i.e. vehicle attributes moved in state.py).
I would like to wait with these changes for three  reasons:

there seem to be some (smaller issues) with the code that we have to figure out before releasing
some people are using the custom component as Bugfix for the login issues
the HA PR regarding config flows got approved so it probably be merged after the 0.117 release. As it includes quite a lot of changes I'd like to wait the merge of this one before proposing new changes.

So please be a little patient 😉

I have some problems with these lagacy services and the last login fixes. I cannot get the data anymore:
DEBUG:bimmer_connected.account:Old token is still valid. Not getting a new one.
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): b2vapi.bmwgroup.com:443
DEBUG:urllib3.connectionpool:https://b2vapi.bmwgroup.com:443 "GET /api/vehicle/navigation/v1/WBAJPXXXXXCDXXXXX?deviceTime=2020-11-22T15%3A44%3A53&dlat=0.0&dlon=0.0 HTTP/1.1" 403 0
DEBUG:bimmer_connected.account:The BMW Connected Drive portal returned an error: UNKNOWN_ERROR (received status code 403 and expected 200).
DEBUG:bimmer_connected.account:
I removed the new parameters but it's still not working... strange.
@rikroe do you maybe have an idea why?

Heloo
my  scripts runing OK, example:
[root@CL-ITNK-BMW bmw]#  ./bmw-lazeni.py
Header:    {'User-Agent': 'Mozilla/5.0 (iPhone; CPU iPhone OS 11_1_1 like Mac OS X) AppleWebKit/604.3.5 (KHTML, like Gecko) Version/11.0 Mobile/15B150 Safari/604.1', 'Authorization': 'Bearer EQhuP4KtZLAVLsAMcwnaWRuY4WqQkEXz'}
URL:     https://b2vapi.bmwgroup.com/api/vehicle/navigation/v1/WBY1Z41000VZ75700
Response json: {'latitude': 43.832296, 'longitude': 13.692223, 'isoCountryCode': 'CZE', 'auxPowerRegular': 1.4, 'auxPowerEcoPro': 1.2, 'auxPowerEcoProPlus': 0.4, 'soc': 28.790361404418945, 'eco': '659,489,421,421,402,475,632,6d0,76f,8ac,9e9', 'norm': '698,4b6,4ac,4ac,41a,48f,632,6d0,76f,8ac,9e9', 'ecoEv': '659,489,421,421,402,475,632,6d0,76f,8ac,9e9', 'normEv': '698,4b6,4ac,4ac,41a,48f,632,6d0,76f,8ac,9e9', 'vehicleMass': '1400', 'driveTrain': 'bev_rex', 'pendingUpdate': False, 'vehicleTracking': True, 'socmax': 38.879997, 'kaccEco': '2520000', 'kaccReg': '2412000', 'kdecEco': '3240000', 'kdecReg': '3240000', 'kup': '3132000', 'kdown': '3384000'}
[root@CL-ITNK-BMW bmw]#
bimmer cli not OK
after  remove params in /bimmer_connected/state.py  for  clear URL  https://b2vapi.bmwgroup.com/api/vehicle/navigation/v1/WBY1Z41000VZ75700
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): b2vapi.bmwgroup.com:443
DEBUG:urllib3.connectionpool:https://b2vapi.bmwgroup.com:443 "GET /api/vehicle/navigation/v1/WBY1Z41000VZ75700 HTTP/1.1" 403 0
DEBUG:bimmer_connected.account:The BMW Connected Drive portal returned an error: UNKNOWN_ERROR (received status code 403 and expected 200).
DEBUG:bimmer_connected.account:
DEBUG:bimmer_connected.state:Service NAVIGATION failed
###############
bimmer cli has:
Header:  {'accept': 'application/json', 'Authorization': 'Bearer thQL3RxlMjwcpQUFCfun8trX4BnUoz2e', 'referer': 'https://www.bmw-connecteddrive.de/app/index.html'}
URL:   https://b2vapi.bmwgroup.com/api/vehicle/navigation/v1/WBY1Z41000VZ75700
After change to me  headers in ./bimmer_connected/account.py:
        if headers is None:
            headers = self.request_header
            print("hevlo")
            print(headers)
            print(url)
            headers = {'User-Agent': 'Mozilla/5.0 (iPhone; CPU iPhone OS 11_1_1 like Mac OS X) AppleWebKit/604.3.5 (KHTML, like Gecko) Version/11.0 Mobile/15B150 Safari/604.1', 'Authorization': 'Bearer zpHTAIY2QRlHhAgSaehy7XzMT79joJqQ'}

DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): b2vapi.bmwgroup.com:443
DEBUG:urllib3.connectionpool:https://b2vapi.bmwgroup.com:443 "GET /api/vehicle/efficiency/v1/WBY1Z41000VZ75700 HTTP/1.1" 200 None
DEBUG:bimmer_connected.account:Old token is still valid. Not getting a new one.
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): b2vapi.bmwgroup.com:443
DEBUG:urllib3.connectionpool:https://b2vapi.bmwgroup.com:443 "GET /api/vehicle/navigation/v1/WBY1Z41000VZ75700 HTTP/1.1" 200 None
DEBUG:bimmer_connected.state:{'STATUS': {'vin': 'WBY1Z41000VZ75700', 'mile .... ...... ...... .... ..... .... ......  f,632,6d0,76f,8ac,9e9', 'vehicleMass': '1400', 'driveTrain': 'bev_rex', 'pendingUpdate': False, 'vehicleTracking': True, 'socmax': 38.879997, 'kaccReg': '2412000', 'kdecReg': '3240000', 'kaccEco': '2520000', 'kdecEco': '3240000', 'kup': '3132000', 'kdown': '3384000'}}
Result: Another header is needed or token ? :-)
After change only token in header
Header:    {'accept': 'application/json', 'Authorization': 'Bearer zpHTAIY2QRlHhAgSaehy7XzMT79joJqQ', 'referer': 'https://www.bmw-connecteddrive.de/app/index.html'}
URL:  https://b2vapi.bmwgroup.com/api/vehicle/navigation/v1/WBY1Z41000VZ75700
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): b2vapi.bmwgroup.com:443
DEBUG:urllib3.connectionpool:https://b2vapi.bmwgroup.com:443 "GET /api/vehicle/efficiency/v1/WBY1Z41000VZ75700 HTTP/1.1" 200 None
DEBUG:bimmer_connected.account:Old token is still valid. Not getting a new one.
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): b2vapi.bmwgroup.com:443
DEBUG:urllib3.connectionpool:https://b2vapi.bmwgroup.com:443 "GET /api/vehicle/navigation/v1/WBY1Z41000VZ75700 HTTP/1.1" 200 None
And try add params:
DEBUG:urllib3.connectionpool:https://b2vapi.bmwgroup.com:443 "GET /api/vehicle/efficiency/v1/WBY1Z41000VZ75700?deviceTime=2020-11-22T19%3A44%3A50&dlat=0.0&dlon=0.0 HTTP/1.1" 200 None
DEBUG:bimmer_connected.account:Old token is still valid. Not getting a new one.
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): b2vapi.bmwgroup.com:443
DEBUG:urllib3.connectionpool:https://b2vapi.bmwgroup.com:443 "GET /api/vehicle/navigation/v1/WBY1Z41000VZ75700?deviceTime=2020-11-22T19%3A44%3A50&dlat=0.0&dlon=0.0 HTTP/1.1" 200 None
Is OK - 'socmax': 38.879997  in respons,   socmax not in CLI - ""Vehicle status:
My script generate token:
 def getToken(BASE_URL, username, password, timeout=(20, 20)):
    try:
        headers = {
                "Content-Type": "application/x-www-form-urlencoded",
                "Content-Length": "124",
                "Connection": "Keep-Alive",
                "Host": BASE_URL,
                "Accept-Encoding": "gzip",
                "Authorization": "Basic blF2NkNxdHhKdVhXUDc0eGYzQ0p3VUVQOjF6REh4NnVuNGNEanli"
                                 "TEVOTjNreWZ1bVgya0VZaWdXUGNRcGR2RFJwSUJrN3JPSg==",
                "Credentials": "nQv6CqtxJuXWP74xf3CJwUEP:1zDHx6un4cDjybLENN3kyfumX2kEYigWPcQpdvDRpIBk7rOJ",
                "User-Agent": "okhttp/2.60"}
        data = {
            'client_id': 'dbf0a542-ebd1-4ff0-a9a7-55172fbfce35',
            'response_type': 'token',
            'redirect_uri': 'https://www.bmw-connecteddrive.com/app/static/external-dispatch.html',
            'scope': 'authenticate_user vehicle_data remote_services',
            'username': username,
            'password': password}

        data = urllib.parse.urlencode(data)#       url = 'https://' + BASE_URL + '/webapi/oauth/token'
        #url = 'https://' + BASE_URL + '/webapi/oauth/token'
        url = 'https://' + BASE_URL + '/gcdm/oauth/authenticate'
        #print (url)
        r = requests.post(url, data=data, headers=headers, allow_redirects=False)
        #print (r)
        if r.status_code == 302:
            logging.info('Access token acquired')
            response_json = dict(
                    urllib.parse.parse_qsl(urllib.parse.urlparse(r.headers['Location']).fragment)
                )
            #print(response_json)
            #print(response_json['access_token'])
            return response_json['access_token']
        else:
            raise ValueError('Unable to login')

    except Exception as msg:
        logging.error(msg)

Hello,
Thanks! It shows the differences. There seems to be some differences in your authentification compared to bimmer cli:

The auth url is: 'https://' + BASE_URL + '/gcdm/oauth/authenticate' instead of 'https://' + BASE_URL + '/gcdm/oauth/token'
The values (data) for the auth request is different, you have some more values:
          'client_id': 'dbf0a542-ebd1-4ff0-a9a7-55172fbfce35',           'response_type': 'token',           'redirect_uri': 'https://www.bmw-connecteddrive.com/app/static/external-dispatch.html',
The expected return state is 302 instead of 200 (token acquired)
the response_json is different (parse_qsl)

If I do this changes then all services are working again.
@gerard33 or @rikroe Could you change the code?

Reopen this as we still have to figure out the best way to deal with the two logins.

Helooo :-)
any news ? :-)
Thanks :-)

Ist there any progress? Would definately appreciate, if I could track the degrading of my battery... Or did I miss it?

Unfortunately, in my testings, I was not able to access the navigation endpoint (that seems to be the only one that contains socMax) any more.
If anybody has new clues or if it is still working for some, please let me know.

Hello
this is a functional problem:
[root@CL-ITNK-BMW ~]#  /usr/local/bin/bmw-going.py -v WBY1Z41000VZ75700  -u "zdenek@havrlik.cz"            -p "supertajneheslo"
socMAX
29.24

[root@CL-ITNK-BMW ~]#

@rikroe @gerard33
Hi, is there any chance that you can get socmax implemented in HA ? I can see that @havrla is able to get socmax value above... This is the MOST interesting parameter of all, when it comes to electrical drive trains, and would be highly valuable to log over time (since it clearly identifies the "useable" battery capacity over time)

Hello this is a functional no problem:
[root@CL-ITNK-BMW ~]# /usr/local/bin/bmw-going.py -v WBY1Z41000VZ75700 -u "xxxx@xxx.cz" -p "supertajneheslo" socMAX 29.24
[root@CL-ITNK-BMW ~]#

@havrla does it still work for you ? I was using the /vehicle/navigation/v1/ endpoint since last week but it broke for me. Is there still a way to get to that socMax data ? one of the most important data points of all. It cleary shows the degradation over time when you plot it in a graph:

24.2. 13:45    Stop  graf
https://cloud.itnaklic.cz/grafy-i3/d/SKrxZgxWk/bmw-i3-rex-vz75700?from=now-7d&to=now
host/navsteva
This problem:
https://customer.bmwgroup.com/gcdm/oauth/authenticate
<Response [401]>
no  get token, valid respons code 302

Closing this as the socMax data is currently not available in the api.

authors: Markinus damienheiser gerard33 havrla jollyjinx obhammer rikroe vielleicht z8i


text:
Invalid JSON by using getAllAssets()

Invalid JSON by using getAllAssets() from rest client
Error:
Caused by: com.fasterxml.jackson.databind.exc.MismatchedInputException: Cannot deserialize instance of java.util.ArrayList<com.binance.api.client.domain.general.Asset> out of START_OBJECT token
at [Source: (okhttp3.ResponseBody$BomAwareReader); line: 1, column: 1]

I have the same problem.

same issue

I have the same problem. Ist this Methode even supported by the Binance API anymore?
I can only find
GET /sapi/v1/margin/allAssets

It does not work for me either, though I get a different error:

com.fasterxml.jackson.core.JsonParseException: Unexpected character ('<' (code 60)): expected a valid value (number, String, array, object, 'true', 'false' or 'null')
 at [Source: (okhttp3.ResponseBody$BomAwareReader); line: 1, column: 2]

Not working for 10 months? Seriously?!
@Adlbert
It seems to have been dropped indeed. I cannot find it in the docs either. However, there is an endpoint that is similar:

Get information of coins (available for deposit and withdraw) for user.
GET /sapi/v1/capital/config/getall

I'll try it  here tonight and tell you.
Wait a moment.

authors: Adlbert KarelRezek dgosset icemagno marco-eckstein okostiukevych

repo: binance-exchange/binance-java-api


text:
System Info

System Info
Windows 10 - 10.0.19045 Build 19045
Alienware m17 R3
CPU - Intel i7-10750H
Node version:
v16.14.2
main.mjs:
import { pipeline } from '@xenova/transformers';

let pipe = await pipeline('feature-extraction','gte-small',{local_files_only:true});
let out = await pipe('Hey model! Respond to me!');

Package.json:
{
  "name": "js-hf",
  "version": "1.0.0",
  "description": "",
  "main": "main.mjs",
  "scripts": {
    "test": "echo \"Error: no test specified\" && exit 1"
  },
  "author": "",
  "license": "ISC",
  "dependencies": {
    "@xenova/transformers": "^2.14.0"
  }
}

Clone this repository directly into root of project:
https://huggingface.co/Supabase/gte-small
Your final project outlook will look like this:
--${YOUR_PROJ_NAME}
----- gte-small
----- node_modules
----- main.mjs
----- package-lock.json
----- package.json

Environment/Platform

[ ] Website/web-app
[ ] Browser extension
[X] Server-side (e.g., Node.js, Deno, Bun)
[ ] Desktop app (e.g., Electron)
[ ] Other (e.g., VSCode extension)

Description
When trying to import models locally, it looks like there are still HTTP requests trying to be fired off. Expected behavior is that when local_files_only is true, that it would only try to use local files.
Secondarily, it looks like the paths to load assets is incorrect on a Windows computer. It is using / instead of \ for transformer assets. It also doesnt seem to be respecting relative path vs absolute path... perhaps that needs to be changed as well?
Error output:
Axrati@DESKTOP-H8KG7FT MINGW64 ~/Desktop/Code/js-hf
$ node main.mjs
Unable to load from local path "C:\Users\Axrati\Desktop\Code\js-hf\node_modules\@xenova\transformers\models\/gte-small/tokenizer.json": "ReferenceError: Headers is not defined"
Unable to load from local path "C:\Users\Axrati\Desktop\Code\js-hf\node_modules\@xenova\transformers\models\/gte-small/tokenizer_config.json": "ReferenceError: Headers is not defined"
Unable to load from local path "C:\Users\Axrati\Desktop\Code\js-hf\node_modules\@xenova\transformers\models\/gte-small/config.json": "ReferenceError: Headers is not defined"
file:///C:/Users/Axrati/Desktop/Code/js-hf/node_modules/@xenova/transformers/src/utils/hub.js:462
                    throw Error(`\`local_files_only=true\` or \`env.allowRemoteModels=false\` and file was not found locally at "${localPath}".`);
                          ^

Error: `local_files_only=true` or `env.allowRemoteModels=false` and file was not found locally at "C:\Users\Axrati\Desktop\Code\js-hf\node_modules\@xenova\transformers\models\/gte-small/tokenizer.j
    at getModelFile (file:///C:/Users/Axrati/Desktop/Code/js-hf/node_modules/@xenova/transformers/src/utils/hub.js:462:27)
    at async getModelJSON (file:///C:/Users/Axrati/Desktop/Code/js-hf/node_modules/@xenova/transformers/src/utils/hub.js:575:18)
    at async Promise.all (index 0)
    at async loadTokenizer (file:///C:/Users/Axrati/Desktop/Code/js-hf/node_modules/@xenova/transformers/src/tokenizers.js:61:18)
    at async Function.from_pretrained (file:///C:/Users/Axrati/Desktop/Code/js-hf/node_modules/@xenova/transformers/src/tokenizers.js:4296:50)
    at async Promise.all (index 0)
    at async loadItems (file:///C:/Users/Axrati/Desktop/Code/js-hf/node_modules/@xenova/transformers/src/pipelines.js:3115:5)
    at async pipeline (file:///C:/Users/Axrati/Desktop/Code/js-hf/node_modules/@xenova/transformers/src/pipelines.js:3055:21)
    at async file:///C:/Users/Axrati/Desktop/Code/js-hf/main.mjs:5:12

As you can see, the "Unable to read local path" is trying to reference node_modules\@xenova\transformers\models\/gte-small/tokenizer.json, which wouldn't be valid Windows path... That said, it looks to not be respecting the relative path (if you see the System Requirements section, you can see the model is a directory in the root of the project, and this is searching through your library in node_modules)
If you look at your code in https://github.com/xenova/transformers.js/blob/main/src/utils/hub.js, you can see on lines 55-56 that the constructor for a FileResponse is instantiating Headers. This leads me to believe that even if the getFile function had its first 2 criteria met (env.useFS && !isValidHttpUrl(urlOrPath))), that its still executing unnecessary code for the protocol its trying to use.
I am happy to help create a PR for this! Please reach out and let me know. Would be helpful to catch up with someone on the team for repo direction/etc.
Reproduction
Based on steps in Sys Reqs / Description
npm install
node main.mjs
Originally posted by @axrati in https://github.com/xenova/transformers.js/issues/520

Unrelated content. @Hongkh168 You've repeatedly post unrelated content in this open source project, we're reporting.

repo: binance/binance-connector-python


text:
Make RegexValidator able to output templated string instead of original

This PR attempts to solve: #18
Please kindly review. Thank you.

Whoops never occurred to me that adding example to docstrings would fail the test/lint suite.

The template string in the example code should be a raw string too, though. :)

I find that modifying the example to this passes flake8:
RegexValidator(re.compile(r'(?P<hex>[0-9a-f]+)'), "Validated hexadecimal: \\g<hex>")
While, as you say, this doesn't pass flake8:
RegexValidator(re.compile(r'(?P<hex>[0-9a-f]+)'), r"Validated hexadecimal: \g<hex>")

What should we do? Changing the entire docstring to raw string, or use the double backslash?
I suppose that it's better to change the entire docstring to raw so that user will see the example code using r'...' template instead of double backslash?

@lahdjirayhan, sorry for the late response, I was on a conference last week. :)

I suppose that it's better to change the entire docstring to raw so that user will see the example code using r'...' template instead of double backslash?

Yes, exactly. :)
I'll merge it, thanks again for the PR!

@lahdjirayhan Not a huge problem, but please keep in mind to base your branches on the latest commit in main (especially after a release), or rebase the branch before creating the PR. I've rebased your branch now and merged it. :)

authors: binaryDiv lahdjirayhan

repo: binary-butterfly/validataclass


text:
Sorry that I didn't state my problem clearly last time

Hi, thank you for your time and patience! I think I didn't state my problem clearly. I've already purchased leetcode premium, and after that, all the tags become 0/0 and I cannot see my progress in company and tag any more. But thank you for all the effort! Let me know whether I state the problem clearly this time. :)
Best,
Huan

and I believe it's a problem even though I'm not logged in. :o

Please DISABLE this extension for now. The current extension in your chrome has not been maintained for a long time, there are a lot of hidden issue.

Could I know the link to the new version of extension? I can't find it for some reason. :(

repo: binarylu/leetcode-ext

license: mit

license_source: bigquery


text:
Fix bug causing graph compilation to fail if termination clean_up_graph flag wasn't set

If the user doesn't set termination to clean_up_graph, the compiler tries to add a wait command to wait for all processes. However, there was a bug in how we added the wait command which causes the compilation to fail. We also didn't report internal_exec_status after wait which is required at the end of the generated script.

That looks OK! Why do we not want to do clean up after termination? Is it because not all graph nodes are on the same machine?
The problem with drain_streams (the other option) is that it doesn't respect head's (and other commands') laziness, meaning that it will run the whole computation even though one one line is actually needed. Therefore, we might want to implement some clean_up for distributed execution correctly. I guess that for now this is fine though.

Feel free to merge whenever you want!

repo: binpash/pash


text:
tasks distribute to master/slave

thx for the great project.
I deploy pyspider on 2 servers, one master & one set as slave (like https://imlonghao.com/10.html )，then I find that, the master always be undertaken more task (frequently master:slave > 2:1)
Is it normal?
What's the rule of task undertake between master & slave?

What components you are running on master and slave?
Where do you run the database and message queue?
How do you know how many tasks a server take?

run all part on master and run fetcher/processor on slave.
database(mysql) /message queue(redis):on another server in local network.
I fetch http://ip.cn?timestamp every seconds,put IP in resule,then I can know ecah server's task.

I add another 3 slave and try again.(1 master 4 slave)
the results

server
times

master
54

slave1
26

slave2
18

slave3
10

slave4
62

all the components will pickup tasks from message queue after a bit sleep time when it's not full load.
So the result is randomly distributed.

authors: Visoar binux

repo: binux/pyspider


text:
MAINT: misc. updates for better Py3 compatibility

Changes:

assertEquals -> assertEqual
assert_raises_regexp -> six.assertRaisesRegex
remove 'U' mode from gradient code tests
make skbio.draw RuntimeWarning tests more lenient to order of warnings (these were failing for me with a fresh conda install)

Should be good to merge when tests pass.

authors: ebolyen jairideout

repo: biocore/scikit-bio


text:
Content Suggestion: Bitaroo

Link to Content: https://trade.bitaroo.com.au/trade/btcaud
Briefly Describe Content: Australia's Biggest Bitcoin Only Exchange
Suggested Section: GET BITCOIN --> Buy

Thank you! :-)

Closing issue as did a pull request instead

repo: bitcoin-only/bitcoin-only


text:
Receiving Addresses

When multiple receiving addresses have been generated, where in Multibit HD can you see the list of generated addresses?
Thanks

These should appear in the Payments screen as unpaid payment requests. Double click an entry to examine it in more detail.

They only appear on the payment screen if a value/amount has been set on the request screen. If you click request and just copy the address and click finish, nothing will appear on the payment screen until someone has sent money to that address.

Yes, the Payments screen doesn't match the use case of "Just send me something whenever to this address". The act of opening the Request panel will increment the address index (hence no Cancel button) but the actual generated address will be "lost".
I think that an empty payment entry should be made to cover this situation which the user can then delete if they know that the request was created in error and never used to avoid clutter.
Of course, if someone deletes the request and subsequently receives funds on it then it'll show up as normal.
Jim - one for Beta 8?

I agree with you Gary.

Propose we do the following:

If user does not type in an amount the Request is generated with Amount blank and it appears in the Payments table. (It can then be inspected, deleted etc)
Exchange rate is stored in the Payment Request (useful for tax reporting as the basis)
The amount is semantically considered to be 'absent/ zero'. Thus any payment into this address will reconcile it, moving it out of the Payments screen and into the appropriate receive as a matchin payment request. Thus you will never see a 'part paid' request when the amount is missing.

Propose we put it in Beta 8.

I've updated the code so that now if you don't add an amount in a PaymentRequest you see it in both the Payments table and in the Send/ Request screen. It appears with a BTC amount of 0. The fiat exchange rate is stored but nothing is shown in the fiat column in the table - too many zeroes otherwise.
When you pay any amount to that address it gets marked as paid and reconciles like any other payment request.
Screenshots:

Awaiting review and closing

Looks good to me. Code review is fine.
Paging @icholas to chime in on this before closing.

Verified working.
Closing.

authors: gary-rowe icholas jim618

repo: bitcoin-solutions/multibit-hd


text:
added cypherpunks manifesto

مانیفست سایفرپانک ها با ویراستاری درست اضافه شد

این فایل دریافت شده ولی در حال حاضر بخش مناسبی براش در سایت نداریم. در صورت نیاز به اطلاعات بیشتر لطفا از طریق ایمیل سایت با ما در ارتباط باشید.

authors: bitcoind-me mbaniasad

repo: bitcoind-me/bitcoind-me


text:
Refine Taxonomies and Metadata in Transcript Files

As part of the redesign of Bitcoin Transcripts, we are refining our taxonomies and information architecture. This refinement involves changes to how we organize metadata in individual transcript markdown files and source files.
Current Structure
Previously, each transcript or resource file contained a categories field in its metadata. We are now moving the categories field from individual files to the Source level. A Source, such as chaincode-labs/chaincode-podcast or bitcoin-explained, contains resources like podcast episodes, conference talks, or YouTube videos, and a transcript is generated from each resource.
The hierarchy is defined as follows:
├── README.md
└── /source-group
    ├── _index.md
    ├── /source1
        ├── _index.md
        ├── transcript-file.md
        ├── another-transcript-file.md
        └── ...
    ├── source2
        ├── _index.md
        ├── transcript-file.md
        └── ...
└── /single-source
    ├── _index.md
    ├── transcript-file.md
    └── ...
└── ...

What Needs to Be Done

Remove categories from Individual Transcripts: The categories metadata should be removed from all individual transcript markdown files.
Add Refined types Metadata at Source Level: The categories field should be replaced by types and added to the _index.md file at the Source level (examples of Source level file: 1, 2).
Examples:

all transcripts under chaincode-labs/chaincode-podcast currently have categories: ["podcast"] (example). This should be removed from each transcript and added to chaincode-labs/chaincode-podcast/_index.md as types: ["podcast"].
all transcripts under advancing-bitcoin/{2019,2020,2022,2023} currently have categories: ["conference"]. This should be removed from each transcript and added to advancing-bitcoin/_index.md as types: ["conference"].

Updated Types List
The current list of categories will be refined and reduced when transitioning to types. The existing categories can be found here.
They will be refined to a new set of types:

podcast
meetup
call
workshop
conference

We are still considering the final list of types, and suggestions are welcome.
Note:
If you have any questions or need clarification on what type a source might be, feel free to ask for guidance.

In hindsight, this wasn't a "good first issue".  I'm glad nobody picked it! :sweat_smile:

@aassoiants  Our current categorization includes both "workshop" and "conference" types. However, our "workshop" entries:

W3 Blockchain Workshop
Decentralized Financial Architecture Workshop
Coordination of Decentralized Finance Workshop

seem more conference-like in scope and scale.
I think that we should Reclassify these "workshops" under the "conferences" type to

Improve consistency in our categorization
More accurately reflect the nature and scope of these events
Simplify our taxonomy for easier navigation and search

Current stats:

39 transcripts with category == workshop
542 transcripts with category == conference

We need to address the categorization of Bitcoin Core Dev Tech events. Currently, these are under the core-dev-tech category, which we've removed as it was only applicable to this specific source.
My proposal is to reclassify these under workshop.
Bitcoin Core Dev Tech events are a "hackathon" focused on collaborative coding and project acceleration rather than a conference. This aligns more closely with the interactive, hands-on nature of workshops rather than the presentation-focused structure of conferences. While I've previously suggested merging workshop and conference types, workshop currently best represents these events' format and purpose.
@aassoiants, any thoughts ?

I think that we should Reclassify these "workshops" under the "conferences" type to
I trust your judgment on reclassifying things.

My proposal is to reclassify these under workshop.
lgmt

39 transcripts with category == workshop
542 transcripts with category == conference
There's few transcripts categorized as workshops - i wonder if it's a helpful category in the first place?

authors: aassoiants kouloumos

repo: bitcointranscripts/bitcointranscripts


text:
Yamaha CL/QL - Please add Input and mute to the mix sends Bus.

In the companion control panel for Yamaha CL & QL is it possible to add input and mute to the mix sends bus? In the same functionality as is programmed for M32 & X32.
Thank you
Rocky

Not sure I understand what you mean by "input and mute to the mix sends bus"? There are input mutes and mix mutes already so you must mean something else?

Hi, What I mean is, if you look at the companion instance for X32/M32 you have options like "Set mute for channel to bus send" or "Set level of channel to bus send". The companion instance for Yamaha don't have these. These two commands are really useful. Sometimes I want to mute a channel to a particular mix but it stays unmuted for other mixes at the same time. Right now the mutes are "master" mutes of a whole channel to everywhere.

Use:
InCh/ToMix/On
and
InCh/ToMix/Level

If you’re not sure what the name of a command is, use a macro preset to record whatever you want to happen.

Thx very much! I don't know why I didn't see this before unless this has been added recently. Nevertheless, this is what I need. Thx for the info.

You don’t need to know the name of any command if you use macros to record them.
https://www.checkcheckonetwo.com/forum/showthread.php?1740-Creating-Macros-on-Yamaha-MIDI-module
Please close this issue if resolved.

authors: MeestorX RockyRoadAudio

repo: bitfocus/companion-module-yamaha-scp


text:
Setting up Keystone: Fix uploading button when checking permission.

Fix uploading button on android when checking permission .

verified this issue on keeper app v 1.2.18(412)

repo: bithyve/bitcoin-keeper


text:
Unable to read the first QR at the time of restore.

-At the time of restore I am unable to read the first Qr from the pdf copy.

-It is happening on both ios and android version 1.3.0(151).
-Unable to scan means while we trying to scan it initiates new scanner without giving any error.

-This is duplicate of #1962

repo: bithyve/hexa


text:
AC5: Account Settings xPub

Upgrade script to ensure all old apps get a xPub added to their UI subAccount.
Change account creation code to ensure an xPub property with value at account initialization.

This is done.

This is done, tested on upgraded app


text:
Text change

Text should be:"Enter node details"

Verified this issue on dev app v2.0.70(437)


text:
Bugs in gift section

I changed the currency from BTC to pound. The "insufficient balance" text vanished. It should remain when there is insufficient balance even in fiat!
When I changed currency from BTC to pound, still the text says, "Sats would be deducted from. " It should say, "Money would be deducted from"

"I changed the currency from BTC to pound. The "insufficient balance" text vanished. It should remain when there is insufficient balance even in fiat!"- this is still happening on dev app v2.0.80(485)

Verified this issue on dev app v2.0.80(486)

authors: ASN-BitHyve cakesoft-swati


text:
Authentication for Chart Repository

Are you considering enabling authentication for the chart repository?

Hey @Soumyakulkarni5
We have an update in a PR to this action in order to introduce auth for helm charts.
You can test it out by changing your workflow yaml line to use a specific branch like this
    - name: Deploy Helm
      uses: bitovi/github-actions-deploy-eks-helm@11-authentication-for-chart-repository

And now you can add all this options:
    ca-file
    cert-file
    key-file
    insecure-skip-tls-verify
    pass-credentials
    password
    username

Let us know if we can do anything to assist.

repo: bitovi/github-actions-deploy-eks-helm


text:
"npm install" fails with current npm/nodejs from latest ubuntu LTS (14.04 trusty)

distro nodejs version 0.10.25~dfsg2-2ubuntu1
distro npm version 1.3.10~dfsg-1
insight current as of rn (79341717ec5)
npm-debug.log is at https://gist.githubusercontent.com/anonymous/cff1f3b8eaa75cdf24ec/raw/npm-debug.log

think i have same error

Installation should be improved, please see: https://bitcore.io/guides/full-node

authors: braydonf gregtampa sneak

repo: bitpay/insight


text:
Translation cleanup

Translations need cleaning up, so plural and singular should become one thing with translation choices.

Merged with #147

repo: bitporch/laravel-forum


text:
wetransfer 1.0.0

New Pull Request Checklist
Please mark the points which you did / accept.

[x] I read the Step Development Guideline
[x] I have a test for my Step, which can be run with bitrise run test (in the step's repository)
[x] I did run bitrise run audit-this-step (in the step's repository - note, if you don't have this workflow in your bitrise.yml, you can copy it from the step template.)
[x] I read and accept the Abandoned Step policy

Hi @kawaiseb ,
it seems nothing changed in the step compared to the previous version, expect you added the step's icon int the step repository.
Would you like to add the icon into the steplib?
If yes, we can not use the icon in your step repo's assets dir, since it is to similar to the wetransfer's icon and it may would lead to copyright issues, most of the times we use schematic icons. Also your icon would need a background and some more padding.
Would you mind if we would create the icon for your step? I would assign you to the pr which adds the icon as a reviewer to let you check the icon.

hi @godrei, i missunderstood the location of the icon. I made a PR directly in the stepLib project : https://github.com/bitrise-io/bitrise-steplib/pull/1417. I close this one.

authors: godrei kawaiseb

repo: bitrise-io/bitrise-steplib


text:
Updating Extension

Hello!
We use AlchemyCMS at work and would love to integrate this extension with our existing AlchemyCMS infrastructure, but it looks like it's pretty out-of-date. Do you plan on updating this extension to be compatible with the newest versions of AlchemyCMS, Dragonfly, etc anytime soon? If not, would you be open to a PR to update these things?
I originally found this app on the list of AlchemyCMS extensions.
Thanks!

Hi @maxtedford
At the moment there is no plan updating this gem. If you are interested in using it I would be happy to receive and discuss a PR with you.
Thank you!

authors: maxtedford robinboening


text:
🛑 Luogu Ti is down

In d10e3d3, Luogu Ti (https://ti.luogu.com.cn/problemset) was down:

HTTP code: 0
Response time: 0 ms

Resolved: Luogu Ti is back up in 538bb33 after 11 minutes.

repo: bitsstdcheee/luogu-status


text:
fixed vulnerabilities CVE-2021-40690

Updated cxf to avoid CVE-2021-40690 vulnerabilites

@bjornvester Can you approve & merge this PR? Security scanners are reporting this plugin as unsafe due to the mentioned CVE in cxf, and this is the fix.

authors: auridevil jasperbogers-ig


text:
Add support for resourceFieldRef in env valuesFrom

Details
Describe the solution you'd like:
https://kubernetes.io/docs/tasks/inject-data-application/downward-api-volume-expose-pod-information/#store-container-fields
I would like to be able to do something like this:
        containers:
          app:
            image:
              repository: ghcr.io/onedr0p/qbittorrent-beta
              tag: 4.6.3@sha256:8e6626727f9f14a3a7909850c40c13e50550bd64cbb3177d8806f0225e57654a
            env:
              QBT_Application__MemoryWorkingSetLimit:
                valueFrom:
                  resourceFieldRef:
                    containerName: app
                    resource: limits.memory
                    divisor: 1Mi
...
            resources:
              requests:
                cpu: 100m
              limits:
                memory: 8152Mi

Added in version 3.0.4

It works, thanks 👍

repo: bjw-s/helm-charts


text:
allow export line

some people want to declare vars and then export them like this:
SOME=thing
export SOME
this pull request will allow that and even validate that the var is set

Thanks!

authors: bkeepers teaforthecat

repo: bkeepers/dotenv


text:
Fix load to respect existing environment variables over env file when doing variable interpolation

Closes issue #319.

:wave: @cbjoseph !
Apologies that this has been sitting for so long, I'm part of a trio of new maintainers of this project, and we're trying to clear out the backlog of folks waiting for responses.
There appears to be a merge conflict associated with some of our work clearing up said backlog.  Could you please resolve the conflict so I can review?
Thank you!

@cadwallion No Problem, added new pull request #332 with no merge conflicts

@cadwallion resolved conflicts! Thanks for taking a look.

@cbjoseph it looks like there is one rubocop error:
lib/dotenv/substitutions/variable.rb:44:1: C: Trailing whitespace detected.

I believe fixing that up should be the last step.

@jonmagic oops! fixed rubocop error, should be all good now

I think that something is still off with the implementation.
balrog:~ n$ cat .env
TEST=5
TEST_COMBINED=combined_${TEST}
balrog:~ n$ TEST=10 ruby dotenv.rb
Before loading .env...

TEST=10
TEST_COMBINED=

{"TEST"=>"5", "TEST_COMBINED"=>"combined_10"}
After loading .env...

TEST=5
TEST_COMBINED=combined_10

#!/usr/bin/env ruby
# frozen_string_literal: true

def display_envs()
  puts
  puts "TEST=#{ENV['TEST']}"
  puts "TEST_COMBINED=#{ENV['TEST_COMBINED']}"
  puts
end

puts "Before loading .env..."
display_envs

require 'dotenv'
puts Dotenv::Environment.new('.env', true).inspect
ENV.update(Dotenv::Environment.new('.env', true))

puts "After loading .env..."
display_envs

/cc @cbjoseph @cadwallion

@cadwallion Can you comment on expectation of this Environment class? My assumption was that it's an internal tool, since it seems undocumented. Could you provide more context on its use case?

This change just caught us off guard as well with a gem update.
@cbjoseph: Is it documented anywhere that Dotenv::Environment is internal and subject to breaking changes?
Ideally, any changes to a method signature should be backwards compatible.
What does everyone think about making the is_load parameter here default to true?
i.e.
    def initialize(filename, is_load = true)
      @filename = filename
      load(is_load)
    end

I also wanted to jump in that this broke many setups for fastlane and fastlane.ci, as it was introduced with a minor version bump. Adding a default parameter with https://github.com/bkeepers/dotenv/pull/345 sounds like a great fix 👍

Curious to know if Dotenv::Environment should be considered public given
that it's not documented.

authors: EvanHahn KrauseFx cadwallion cbjoseph jessedoyle jonmagic nijikon


text:
Added text2png for Strong Captcha

For Issue #784
Work in progress. Need suggestion @bkimminich

Following npm package has been used.
https://www.npmjs.com/package/text2png

Hi! We didn't want to replace the CAPTCHA in "Contact Us" with something stronger, but add a separate stronger CAPTCHA to another functionality, like "Recycling".

authors: Nikita-Jr bkimminich

repo: bkimminich/juice-shop


text:
[Gally]: master <- dev

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repo: blackflux/lambda-tdd