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remove thinking
Browse files
app.py
CHANGED
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@@ -2,21 +2,19 @@ import gradio as gr
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import fitz
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import os
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import easyocr
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from huggingface_hub import InferenceClient
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HF_API_KEY = os.getenv("HF_API_KEY")
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# Initialize the Hugging Face Inference Client
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client = InferenceClient(
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provider="together",
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api_key=HF_API_KEY
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)
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# Initialize EasyOCR
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reader = easyocr.Reader(['en'])
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def extract_text_from_pdf(pdf_file):
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"""Extracts text from the uploaded PDF file."""
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text = ""
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with fitz.open(pdf_file.name) as doc:
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for page in doc:
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@@ -24,12 +22,10 @@ def extract_text_from_pdf(pdf_file):
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return text.strip()
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def extract_text_from_image(image_file):
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"""Extracts text from an uploaded image file using EasyOCR."""
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text = reader.readtext(image_file.name, detail=0)
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return "\n".join(text).strip()
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def analyze_medical_report(file):
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"""Determines file type (PDF or Image) and extracts text accordingly."""
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if file.name.lower().endswith(".pdf"):
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text = extract_text_from_pdf(file)
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else:
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@@ -38,35 +34,41 @@ def analyze_medical_report(file):
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if not text:
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return "No text found in the uploaded document."
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# Construct message for DeepSeek AI
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messages = [
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{"role": "user", "content": f"""
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]
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try:
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# Send request to Hugging Face Inference API
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completion = client.chat.completions.create(
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model="deepseek-ai/DeepSeek-R1",
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messages=messages,
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max_tokens=500,
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)
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except Exception as e:
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return f"Error: {str(e)}"
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# Gradio Interface
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interface = gr.Interface(
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fn=analyze_medical_report,
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inputs=gr.File(type="filepath", label="Upload Medical Report (PDF/Image)"),
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import fitz
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import os
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import easyocr
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import re
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from huggingface_hub import InferenceClient
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HF_API_KEY = os.getenv("HF_API_KEY")
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client = InferenceClient(
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provider="together",
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api_key=HF_API_KEY
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)
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reader = easyocr.Reader(['en'])
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def extract_text_from_pdf(pdf_file):
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text = ""
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with fitz.open(pdf_file.name) as doc:
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for page in doc:
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return text.strip()
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def extract_text_from_image(image_file):
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text = reader.readtext(image_file.name, detail=0)
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return "\n".join(text).strip()
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def analyze_medical_report(file):
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if file.name.lower().endswith(".pdf"):
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text = extract_text_from_pdf(file)
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else:
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if not text:
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return "No text found in the uploaded document."
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messages = [
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{"role": "user", "content": f"""
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Analyze the following medical report and provide a structured response in the exact format below.
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Ensure the response follows this structure, dont use extra space
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**Short Description:**
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[Briefly summarize the report in 2-3 sentences. Include key test details.]
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**Key Concerns:**
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explain in Ordered form. First tell the test name value and tell is it high or low. Keep it short
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2-3 main concerns are enough
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1. **[Test Name (Value)]:** [High or low Explain what the abnormality suggests.]
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**Recommendations:**
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Give in bullet points. Give only 2-3 and dont write too much explanation
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Medical Report:
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{text}
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"""}
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]
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try:
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completion = client.chat.completions.create(
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model="deepseek-ai/DeepSeek-R1",
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messages=messages,
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max_tokens=500,
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)
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output = completion.choices[0].message.content if completion.choices else "No response generated."
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output = re.sub(r"<think>.*?</think>", "", output, flags=re.DOTALL).strip()
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return output
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except Exception as e:
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return f"Error: {str(e)}"
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interface = gr.Interface(
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fn=analyze_medical_report,
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inputs=gr.File(type="filepath", label="Upload Medical Report (PDF/Image)"),
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